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Jupyter Notebook 1,171 246 Updated Aug 1, 2024
R 9 3 Updated Jan 30, 2020

Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

R 93 16 Updated Mar 18, 2025

Weaviate is an open-source vector database that stores both objects and vectors, allowing for the combination of vector search with structured filtering with the fault tolerance and scalability of …

Go 12,929 909 Updated Mar 28, 2025

LlamaIndex is the leading framework for building LLM-powered agents over your data.

Python 40,462 5,755 Updated Mar 28, 2025

Large-scale Self-supervised Pre-training Across Tasks, Languages, and Modalities

Python 20,987 2,611 Updated Mar 4, 2025

AI Toolkit for Healthcare Imaging

Python 6,260 1,164 Updated Mar 27, 2025

A repo for distributed training of language models with Reinforcement Learning via Human Feedback (RLHF)

Python 4,611 476 Updated Jan 8, 2024

Images and other data from the JUMP Cell Painting Consortium

Shell 167 18 Updated Feb 16, 2025

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

HTML 347 79 Updated Jun 4, 2024

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

Python 160 24 Updated Mar 20, 2025

Protein Graph Library

Jupyter Notebook 1,081 133 Updated Mar 3, 2025

cBioPortal for Cancer Genomics

Java 757 647 Updated Mar 28, 2025

Open Machine Intelligence Framework for Hackers. (GPU/CPU)

Rust 5,555 270 Updated Mar 20, 2024

17 Classification Algorithms using R

56 52 Updated Feb 22, 2016

17 Classification Algorithms using R

1 Updated Feb 22, 2016

Reversible conversions between types

Scala 658 123 Updated Nov 22, 2024

Python library for multilinear algebra and tensor factorizations

Python 403 112 Updated Aug 23, 2018
Python 1 Updated Jun 2, 2014

Julia AutoDiff

Julia 28 5 Updated May 26, 2016

This repository contains bits and bobs of various R-scripts and functions that I've written organized loosely by topic.

R 2 Updated Feb 7, 2018

Open source software library for numerical computation using data flow graphs.

C++ 1 Updated Nov 19, 2015

The PheWAS R package

R 1 Updated Jul 18, 2014

Graphify is a Neo4j unmanaged extension used for document and text classification using graph-based hierarchical pattern recognition.

Java 380 86 Updated Apr 4, 2020

Bio4j abstract model and general entry point to the project

Java 118 19 Updated Dec 16, 2016

mining and merging disease resources

Web Ontology Language 6 3 Updated Aug 4, 2016

This simple code will identify and map the amino acid, on a given peptide chain, that is been coded by a codon which contains the nucleotide at a given position on a given sequence.

Python 1 Updated Apr 26, 2012

This simple code will identify and map the amino acid, on a given peptide chain, that is been coded by a codon which contains the nucleotide at a given position on a given sequence.

Python 2 1 Updated Apr 26, 2012
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