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Starred repositories

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Chromosome Painting Tool for visualizing signal track density heat-maps of ENTEx experiments.

HTML 1 Updated Apr 7, 2021
TypeScript 4 Updated Mar 27, 2025

A calendar that lets you capture and reflect on every day

JavaScript 2 Updated Mar 22, 2025

Statistical power studies for multi-omics experiments.

R 31 10 Updated Jan 18, 2025

"AutoAgent: Fully-Automated and Zero-Code LLM Agent Framework"

Python 3,293 451 Updated Mar 26, 2025

Contains all the codes and initial data used for this study

R 2 Updated Jan 26, 2025

Plot microbiome time series in parallel

R 26 3 Updated Nov 7, 2023

Annotation and Ranking of Structural Variation

Tcl 247 35 Updated Mar 6, 2025

Run AI Agent in your browser.

Python 10,176 1,674 Updated Mar 27, 2025

In-depth tutorials on LLMs, RAGs and real-world AI agent applications.

Jupyter Notebook 6,832 1,183 Updated Mar 25, 2025

Inference of microbial interaction networks from large-scale heterogeneous abundance data

Julia 80 8 Updated Jun 6, 2024

Build Graph Nets in Tensorflow

Python 5,383 784 Updated Dec 12, 2022

A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.

204 13 Updated Feb 22, 2025

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

Python 87 27 Updated Jul 12, 2024

Pytorch implementation of EpiFoundation

Python 14 Updated Feb 25, 2025

A set of tools to understand what is happening inside a Random Forest

R 233 37 Updated Mar 25, 2024

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

JavaScript 202 45 Updated Mar 27, 2025

The EasyMultiProfiler package aims to offer a user-friendly and efficient multi-omics data analysis tool on the R platform. It facilitates various essential tasks related to microbiome, genome, and…

R 31 8 Updated Mar 26, 2025

🪄 Create rich visualizations with AI

TypeScript 10,971 844 Updated Mar 27, 2025

Make websites accessible for AI agents

Python 49,622 5,185 Updated Mar 27, 2025

Call LLM APIs from R

R 405 57 Updated Mar 27, 2025

Kickstart your LLMOps initiative with a flexible, robust, and productive Python package.

Python 861 113 Updated Feb 13, 2025

High-Resolution 3D Assets Generation with Large Scale Hunyuan3D Diffusion Models.

Python 8,011 650 Updated Mar 26, 2025

Supplementary scripts for the Snfifles2 publication

Python 3 2 Updated Jan 11, 2024

Wiki.js | A modern and powerful wiki app built on Node.js

Vue 25,925 2,866 Updated Mar 24, 2025

Desktop app for prototyping and debugging LangGraph applications locally.

2,675 167 Updated Mar 11, 2025

Fully local web research and report writing assistant

Python 6,653 641 Updated Mar 24, 2025

Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more

Shell 28 8 Updated May 1, 2023

Software to process, statistically analyse and visualise deep mutational scanning data

R 14 Updated Feb 21, 2025
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