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Issues7 (7)

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instefanpeidli/mousipy (press backspace or delete to remove)

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stefanpeidli/mousipy

counts values changing

Hi! I am sure I am misunderstanding something but couldn t find any documentation to explain this behaviour. I have found that when i run mousipy as follows: `from mousipy import translate adata_sub ...

• amjass12
·
• Opened 
  on Dec 3, 2024
·
• #10

stefanpeidli/mousipy

Tests failing for python 3.9, 3.10

Likely caused by scanpy x numpy interaction. Could try adding scanpy to dependencies.

• stefanpeidli
·
• Opened 
  on Oct 29, 2024
·
• #9

stefanpeidli/mousipy

'csc_matrix' object has no attribute 'A'

Hi there, when trying to use translate, it fails with the following messages and error. Any suggestions what might be the issue? humanized_cebpa = translate(dd_scRNA) 100%|██████████| 25803/25803 [00:28 ...

• mbassalbioinformatics
·
• 2
·
• Opened 
  on Oct 17, 2024
·
• #7

stefanpeidli/mousipy

FileNotFoundError: human_to_mouse.csv

Hi, I used pip install mousipy to install and have tried to use translate on an anndata object that has mouse gene symbols. I m getting a FileNotFoundError: FileNotFoundError: [Errno 2] No such file or ...

bug

• georginaalbadri
·
• 2
·
• Opened 
  on Jan 31, 2024
·
• #5

stefanpeidli/mousipy

from human to mouse

Hi! Are you planning to add a function that can translate from human genes to mouse genes? Best, Sandra

enhancement

• sandrav-CGEN
·
• 2
·
• Opened 
  on Nov 22, 2022
·
• #3

stefanpeidli/mousipy

Error: 'numpy.ndarray' object has no attribute 'A'

Could you please help? import scvelo as scv from mousipy import translate humanized_mdata = translate(mdata) AttributeError Traceback (most recent call last) Input In [219], in cell line: 3 () 1 import ...

bug

• tingxie2020
·
• 15
·
• Opened 
  on Oct 28, 2022
·
• #2

stefanpeidli/mousipy

FileNotFoundError when loading

Hi all, After installing mousipy with pip, I ran the recommended code and received this error: import scvelo as scv from mousipy import translate FileNotFoundError: [Errno 2] No such file or directory: ...

enhancement

• andhamel
·
• 6
·
• Opened 
  on Sep 16, 2022
·
• #1

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