Official code release for BOLD5000 Release 2.0

Scripts for analyzing fMRI data using FSL

Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP

This repository contains analysis of high dimensional, time series FMRI brain images to determine which region of brain is responsible for processing visualisation of sentence and pictures.

Analysis of time-series fMRI data

The Platinum Genomes Truthset

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

Command line interface for QIIME 2

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

bioBakery tools for meta'omic profiling

NCBI Prokaryotic Genome Annotation Pipeline

A Variant Caller, Distributed. Apache 2 licensed.

(Genomics) Dockerfile for running Avocado - http://bdgenomics.org

(Genomics) Dockerfile for running Adam - http://bdgenomics.org

Spatial Analysis of Functional Enrichment (SAFE)

Detects and interactively deactivates duplicate Apt source entries and deletes sources list files without valid enabled source entries (as requested in https://askubuntu.com/a/762815/175814).

Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.

Interactively explore metagenomes and more from a web browser.

The most advanced frontend drag & drop page builder. Create high-end, pixel perfect websites at record speeds. Any theme, any page, any design.

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Python based open source AutoAI with training code generation

Tools for teaching and doing data science without an internet connection

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

An open-source application for biological image analysis

BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.

The complete blood count (CBC) dataset contains a total of 360 blood smear images of red blood cells (RBCs), white blood cells (WBCs), and Platelets with annotations.