iqtree2

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PathoGenOmics-Lab / snpick

snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

rust fast snps alignments fasta raxml phylogeny asc iqtree raxml-ng iqtree2 snp-sites snpick

Updated Nov 20, 2024
Rust

Anand-Research-Group / complex-I

Star

This repository contains a set of scripts and workflows designed to search for Respiratory Complex I (NADH Ubiquinone Oxidoreductase) subunits in prokaryotic genomes and proteomes.

bioinformatics biopython protein-sequences proteome homology-search mafft mmseqs2 fasttree prokaryotic-genomes hmmer3 species-distribution evalue-thresholds operons iqtree2 protein-sequences-tree

Updated Mar 10, 2025
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