wdecoster
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A local-haplotagging-based small and structural variant caller
Generic targeted local assembler and genotyper for long-read data
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
A tool for motif annotation and visualization in tandem repeats.
Fast and exact gap-affine partial order alignment
Tool for plotting sequencing data along genomic coordinates.
A program for the analysis of single cell nanopore long read data
SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
A tool for somatic structural variant calling using long reads
Demultiplexing pooled scRNA-seq data with or without genotype reference
Efficient genotyping bi-allelic SNPs on single cells
Framework for sensitive DE testing (using neighbourhoods)
ClairS - a deep-learning method for long-read somatic small variant calling
Copy number caller for long read data including SNV utilization
π π π―π¨π₯π effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code,β¦
using all the bits for echt rapid variant annotation and filtering
Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
Work with bioinformatic files using Arrow, Polars, and/or DuckDB