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  • vcf2maf Public

    Forked from mskcc/vcf2maf

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl Other Updated Jul 5, 2024

  • ensembl-vep Public

    Forked from Ensembl/ensembl-vep

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Perl Apache License 2.0 Updated Jul 1, 2024

  • ichorCNA Public

    Forked from GavinHaLab/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    R GNU General Public License v3.0 Updated Jun 9, 2024

  • Griffin Public

    Forked from adoebley/Griffin

    A flexible framework for nucleosome profiling of cell-free DNA

    Python Other Updated Jul 27, 2023

  • Griffin_analyses Public

    Forked from adoebley/Griffin_analyses

    Scripts for analyses in the Griffin manuscript

    Jupyter Notebook Other Updated Dec 14, 2022