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RcppModule.cpp
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#include <Rcpp.h>
//#include "spatRaster.h"
#include "spatRasterMultiple.h"
#include "spatGraph.h"
#include <memory> //std::addressof
#include "NA.h"
#include "spatTime.h"
//#include "spatVector2.h"
//static void SpatRaster_finalizer( SpatRaster* ptr ){
//}
/*
Rcpp::List getBlockSizeR(SpatRaster* r, unsigned n, double frac) {
SpatOptions opt;
opt.ncopies = n;
opt.set_memfrac(frac);
BlockSize bs = r->getBlockSize(opt);
Rcpp::List L = Rcpp::List::create(Rcpp::Named("row") = bs.row, Rcpp::Named("nrows") = bs.nrows, Rcpp::Named("n") = bs.n);
return(L);
}
*/
Rcpp::List getBlockSizeR(SpatRaster* r, SpatOptions* opt) {
BlockSize bs = r->getBlockSize(*opt);
Rcpp::List L = Rcpp::List::create(Rcpp::Named("row") = bs.row, Rcpp::Named("nrows") = bs.nrows, Rcpp::Named("n") = bs.n);
return(L);
}
Rcpp::List getBlockSizeWrite(SpatRaster* r) {
BlockSize bs = r->bs;
Rcpp::List L = Rcpp::List::create(Rcpp::Named("row") = bs.row, Rcpp::Named("nrows") = bs.nrows, Rcpp::Named("n") = bs.n);
return(L);
}
bool sameObject(SpatRaster* a, SpatRaster* b) {
return a == b;
}
Rcpp::List getDataFrame(SpatDataFrame* v) {
size_t n = v->ncol();
Rcpp::List out(n);
if (n == 0) {
return(out);
}
long longNA = NA<long>::value;
std::string stringNA = v->NAS;
SpatTime_t timeNA = NA<SpatTime_t>::value;
std::vector<std::string> nms = v->names;
std::vector<size_t> itype = v->itype;
for (size_t i=0; i < n; i++) {
if (itype[i] == 0) {
out[i] = v->getD(i);
} else if (itype[i] == 1) {
//gives warning with NA #1031
// Rcpp::wrap(v->getI(i));
std::vector<long> ints = v->getI(i);
size_t n = ints.size();
Rcpp::IntegerVector iv(n, NA_INTEGER);
for (size_t j=0; j<n; j++) {
if (ints[j] != longNA) {
iv[j] = ints[j];
}
}
out[i] = iv;
} else if (itype[i] == 2){
Rcpp::StringVector s = Rcpp::wrap(v->getS(i));
for (R_xlen_t j=0; j<s.size(); j++) {
if (s[j] == stringNA) {
s[j] = NA_STRING;
}
}
out[i] = s;
} else if (itype[i] == 3){
std::vector<int8_t> b = v->getB(i);
Rcpp::LogicalVector d(b.size());
for (size_t j=0; j<b.size(); j++) {
if (b[j] > 1) {
d[j] = NA_LOGICAL;
} else {
d[j] = b[j];
}
}
out[i] = d;
} else if (itype[i] == 4){
SpatTime_v tx = v->getT(i);
Rcpp::NumericVector tv = Rcpp::wrap(tx.x);
for (R_xlen_t j=0; j<tv.size(); j++) {
if (tv[j] == timeNA) {
tv[j] = NA_REAL;
}
}
out[i] = tv;
} else if (itype[i] == 5){
out[i] = v->getF(i);
}
}
out.names() = nms;
// todo: deal with NAs in int and str
return out;
// Rcpp::df is nice, but no of variables is <= 20,
// and no "stringsAsFactors"=false
// Rcpp::DataFrame result(out);
// result.attr("names") = v->names();
// return result;
}
Rcpp::List getVectorAttributes(SpatVector* v) {
SpatDataFrame df = v->df;
Rcpp::List lst = getDataFrame(&df);
return lst;
}
/*
Rcpp::List getRasterAttributes(SpatRaster* x) {
Rcpp::List lst;
if (x->nlyr() > 0) {
SpatDataFrame df = x->source[0].cats[0];
lst = getDataFrame(&df);
}
return lst;
}
*/
Rcpp::DataFrame get_geometryDF(SpatVector* v) {
SpatDataFrame df = v->getGeometryDF();
Rcpp::DataFrame out = Rcpp::DataFrame::create(
Rcpp::Named("id") = df.iv[0],
Rcpp::Named("part") = df.iv[1],
Rcpp::Named("x") = df.dv[0],
Rcpp::Named("y") = df.dv[1],
Rcpp::Named("hole") = df.iv[2]
);
return out;
}
std::vector<std::vector<std::vector<Rcpp::DataFrame>>> get_geometryList(SpatVector* v, const std::string xnm, const std::string ynm) {
size_t ni = v->nrow();
std::vector<std::vector<std::vector<Rcpp::DataFrame>>> out(ni);
for (size_t i=0; i < ni; i++) {
SpatGeom g = v->getGeom(i);
size_t nj = g.size();
if (nj == 0) { // empty
continue;
}
out[i].resize(nj);
for (size_t j=0; j < nj; j++) {
SpatPart p = g.getPart(j);
size_t nk = p.nHoles();
out[i][j].reserve(nk + 1);
Rcpp::DataFrame m = Rcpp::DataFrame::create(
Rcpp::Named(xnm) = p.x,
Rcpp::Named(ynm) = p.y
);
out[i][j].push_back(m);
for (size_t k=0; k<nk ; k++) {
SpatHole h = p.getHole(k);
Rcpp::DataFrame m = Rcpp::DataFrame::create(
Rcpp::Named(xnm) = h.x,
Rcpp::Named(ynm) = h.y
);
out[i][j].push_back(m);
}
}
}
return out;
}
RCPP_EXPOSED_CLASS(SpatFactor)
RCPP_EXPOSED_CLASS(SpatTime_v)
RCPP_EXPOSED_CLASS(SpatSRS)
RCPP_EXPOSED_CLASS(SpatExtent)
RCPP_EXPOSED_CLASS(SpatMessages)
RCPP_EXPOSED_CLASS(SpatOptions)
RCPP_EXPOSED_CLASS(SpatCategories)
RCPP_EXPOSED_CLASS(SpatDataFrame)
RCPP_EXPOSED_CLASS(SpatWindow)
RCPP_EXPOSED_CLASS(SpatRasterSource)
RCPP_EXPOSED_CLASS(SpatRaster)
RCPP_EXPOSED_CLASS(SpatRasterCollection)
RCPP_EXPOSED_CLASS(SpatRasterStack)
RCPP_EXPOSED_CLASS(SpatVector)
RCPP_EXPOSED_CLASS(SpatVectorProxy)
RCPP_EXPOSED_CLASS(SpatVectorCollection)
//RCPP_EXPOSED_CLASS(SpatGraph)
//RCPP_EXPOSED_CLASS(SpatVector2)
RCPP_MODULE(spat){
using namespace Rcpp;
/*
class_<SpatVector2>("SpatVector2")
.constructor()
.field("x", &SpatVector2::X)
.field("y", &SpatVector2::Y)
.field("z", &SpatVector2::Z)
.field("g", &SpatVector2::G)
.field("p", &SpatVector2::P)
.field("h", &SpatVector2::H)
.method("from_old", &SpatVector2::from_old)
.method("to_old", &SpatVector2::to_old)
;
*/
class_<SpatTime_v>("SpatTime_v")
.constructor()
.field("step", &SpatTime_v::step)
.field("zone", &SpatTime_v::zone)
.field("x", &SpatTime_v::x)
;
class_<SpatFactor>("SpatFactor")
.constructor()
.constructor<std::vector<size_t>, std::vector<std::string>, bool>()
// .constructor<std::vector<unsigned>, std::vector<std::string>>()
.field("values", &SpatFactor::v)
.field("labels", &SpatFactor::labels)
.field("ordered", &SpatFactor::ordered)
;
class_<SpatSRS>("SpatSRS")
.constructor()
.method("set", &SpatSRS::set)
.method("is_lonlat", &SpatSRS::is_lonlat)
.method("to_meter", &SpatSRS::to_meter)
;
/*
class_<SpatGraph>("SpatGraph")
.constructor()
;
*/
class_<SpatExtent>("SpatExtent")
.constructor()
.constructor<double, double, double, double>()
.method("deepcopy", &SpatExtent::deepCopy, "deepCopy")
.property("vector", &SpatExtent::asVector)
.property("valid", &SpatExtent::valid)
.property("valid_notempty", &SpatExtent::valid_notempty)
.property("empty", &SpatExtent::empty)
.method("align", &SpatExtent::align, "align")
.method("intersect", &SpatExtent::intersect, "intersect")
.method("as.points", &SpatExtent::asPoints, "as.points")
.method("ceil", &SpatExtent::ceil, "ceil")
.method("compare", &SpatExtent::compare, "compare")
.method("floor", &SpatExtent::floor, "floor")
.method("round", &SpatExtent::round, "round")
.method("union", &SpatExtent::unite, "union")
.method("sampleRandom", &SpatExtent::sampleRandom)
.method("sampleRegular", &SpatExtent::sampleRegular)
.method("sample", &SpatExtent::test_sample)
;
/*
class_<SpatWindow>("SpatWindow")
.field_readonly("full_extent", &SpatWindow::full_extent)
.field_readonly("full_nrow", &SpatWindow::full_nrow)
.field_readonly("full_ncol", &SpatWindow::full_ncol)
.field_readonly("off_row", &SpatWindow::off_row)
.field_readonly("off_col", &SpatWindow::off_col)
.field_readonly("expand", &SpatWindow::expand)
;
*/
class_<SpatMessages>("SpatMessages")
.constructor()
//.field("success", &SpatMessages::success)
.field("has_error", &SpatMessages::has_error)
.field("has_warning", &SpatMessages::has_warning)
//.method("has_error", &SpatMessages::hasError)
//.method("has_warning", &SpatMessages::hasWarning)
;
class_<SpatOptions>("SpatOptions")
.constructor()
.method("deepcopy", &SpatOptions::deepCopy, "deepCopy")
.field("parallel", &SpatOptions::parallel)
.field("metadata", &SpatOptions::tags)
.property("tempdir", &SpatOptions::get_tempdir, &SpatOptions::set_tempdir )
.property("memfrac", &SpatOptions::get_memfrac, &SpatOptions::set_memfrac )
.property("memmax", &SpatOptions::get_memmax, &SpatOptions::set_memmax )
.property("memmin", &SpatOptions::get_memmin, &SpatOptions::set_memmin )
.property("tolerance", &SpatOptions::get_tolerance, &SpatOptions::set_tolerance )
.property("filenames", &SpatOptions::get_filenames, &SpatOptions::set_filenames )
.property("filetype", &SpatOptions::get_filetype, &SpatOptions::set_filetype )
.property("datatype", &SpatOptions::get_datatype, &SpatOptions::set_datatype )
.property("verbose", &SpatOptions::get_verbose, &SpatOptions::set_verbose )
.property("NAflag", &SpatOptions::get_NAflag, &SpatOptions::set_NAflag )
//.property("ncdfcopy", &SpatOptions::get_ncdfcopy, &SpatOptions::set_ncdfcopy )
.property("statistics", &SpatOptions::get_statistics, &SpatOptions::set_statistics )
.property("overwrite", &SpatOptions::get_overwrite, &SpatOptions::set_overwrite )
//.property("append", &SpatOptions::get_append, &SpatOptions::set_append )
.field("datatype_set", &SpatOptions::datatype_set)
.field("threads", &SpatOptions::threads)
.property("progress", &SpatOptions::get_progress, &SpatOptions::set_progress)
.field("progressbar", &SpatOptions::progressbar)
.property("ncopies", &SpatOptions::get_ncopies, &SpatOptions::set_ncopies)
.property("def_filetype", &SpatOptions::get_def_filetype, &SpatOptions::set_def_filetype )
.property("def_datatype", &SpatOptions::get_def_datatype, &SpatOptions::set_def_datatype )
.property("def_verbose", &SpatOptions::get_def_verbose, &SpatOptions::set_def_verbose )
//.property("def_bandorder", &SpatOptions::get_def_bandorder, &SpatOptions::set_def_bandorder )
.property("todisk", &SpatOptions::get_todisk, &SpatOptions::set_todisk)
.field("messages", &SpatOptions::msg, "messages")
.field("gdal_options", &SpatOptions::gdal_options)
.field("tmpfile", &SpatOptions::tmpfile )
.field("names", &SpatOptions::names)
.property("steps", &SpatOptions::get_steps, &SpatOptions::set_steps)
// .property("overwrite", &SpatOptions::set_overwrite, &SpatOptions::get_overwrite )
//.field("gdaloptions", &SpatOptions::gdaloptions)
.property("scale", &SpatOptions::get_scale, &SpatOptions::set_scale)
.property("offset", &SpatOptions::get_offset, &SpatOptions::set_offset)
.method("has_error", &SpatOptions::hasError)
.method("has_warning", &SpatOptions::hasWarning)
.method("getError", &SpatOptions::getError)
.method("getWarnings", &SpatOptions::getWarnings)
;
class_<SpatDataFrame>("SpatDataFrame")
.constructor()
.field_readonly("itype", &SpatDataFrame::itype)
.field_readonly("iplace", &SpatDataFrame::iplace)
.property("names", &SpatDataFrame::get_names, &SpatDataFrame::set_names)
.property("nrow", &SpatDataFrame::nrow, &SpatDataFrame::resize_rows, "nrow")
.property("ncol", &SpatDataFrame::ncol, &SpatDataFrame::resize_cols, "ncol")
.method("has_error", &SpatDataFrame::hasError)
.method("has_warning", &SpatDataFrame::hasWarning)
.method("getWarnings", &SpatDataFrame::getWarnings)
.method("getError", &SpatDataFrame::getError)
.method("add_column_double", (bool (SpatDataFrame::*)(std::vector<double>, std::string name))( &SpatDataFrame::add_column))
.method("add_column_long", (bool (SpatDataFrame::*)(std::vector<long>, std::string name))( &SpatDataFrame::add_column))
.method("add_column_string", (bool (SpatDataFrame::*)(std::vector<std::string>, std::string name))( &SpatDataFrame::add_column))
.method("add_column_factor", (bool (SpatDataFrame::*)(SpatFactor, std::string name))( &SpatDataFrame::add_column))
.method("add_column_bool", (bool (SpatDataFrame::*)(std::vector<int>, std::string name))( &SpatDataFrame::add_column_bool))
.method("add_column_time", &SpatDataFrame::add_column_time)
.method("remove_column", (bool (SpatDataFrame::*)(std::string field))( &SpatDataFrame::remove_column))
.method("remove_column", (bool (SpatDataFrame::*)(int i))( &SpatDataFrame::remove_column))
.method("get_datatypes", &SpatDataFrame::get_datatypes)
.method("get_timezones", &SpatDataFrame::get_timezones)
.method("get_timesteps", &SpatDataFrame::get_timesteps)
.method("subset_rows", (SpatDataFrame (SpatDataFrame::*)(std::vector<size_t>))( &SpatDataFrame::subset_rows))
.method("subset_cols", (SpatDataFrame (SpatDataFrame::*)(std::vector<size_t>))( &SpatDataFrame::subset_cols))
.method("remove_rows", &SpatDataFrame::remove_rows)
.method("cbind", &SpatDataFrame::cbind)
.method("rbind", &SpatDataFrame::rbind)
.method("values", &getDataFrame)
.method("unique", &SpatDataFrame::unique)
//.method("one_string", &SpatDataFrame::one_string)
.method("write", &SpatDataFrame::write_dbf)
.field("messages", &SpatDataFrame::msg)
.method("strwidth", &SpatDataFrame::strwidth)
;
class_<SpatVectorCollection>("SpatVectorCollection")
.constructor()
.constructor<std::string, std::string, std::string, std::string, std::vector<double>, SpatVector>()
//.property("names", &SpatVectorCollection::get_names, &SpatVectorCollection::set_names)
.method("deepcopy", &SpatVectorCollection::deepCopy, "deepCopy")
.method("size", &SpatVectorCollection::size)
.method("get", &SpatVectorCollection::get)
.method("push_back", &SpatVectorCollection::push_back)
.method("subset", &SpatVectorCollection::subset)
.method("replace", &SpatVectorCollection::replace)
.method("append", &SpatVectorCollection::append)
.method("has_error", &SpatVectorCollection::hasError)
.method("has_warning", &SpatVectorCollection::hasWarning)
.method("getWarnings", &SpatVectorCollection::getWarnings)
.method("getError", &SpatVectorCollection::getError)
.method("from_hex_col", &SpatVectorCollection::from_hex_col)
.method("setNames", &SpatVectorCollection::setNames, "setNames" )
.property("names", &SpatVectorCollection::getNames)
;
class_<SpatCategories>("SpatCategories")
.constructor()
.field_readonly("df", &SpatCategories::d)
.field("index", &SpatCategories::index)
.method("combine", &SpatCategories::combine)
;
/*
class_<SpatVector>("SpatVector")
.constructor()
.constructor<SpatExtent, std::string>()
.constructor<std::vector<std::string>>()
;
*/
class_<SpatVector>("SpatVector")
.constructor()
.constructor<SpatExtent, std::string>()
.constructor<std::vector<std::string>>()
// .method("pointInPolygon", &SpatVector::pointInPolygon)
.method("deepcopy", &SpatVector::deepCopy)
.method("wkt", &SpatVector::wkt)
.method("wkb", &SpatVector::wkb)
.method("wkb_raw", &SpatVector::wkb_raw)
.method("hex", &SpatVector::hex)
.method("from_hex", &SpatVector::from_hex)
.method("make_nodes", &SpatVector::make_nodes)
.method("boundary", &SpatVector::boundary)
.method("polygonize", &SpatVector::polygonize)
.method("normalize", &SpatVector::normalize)
.method("normalize_longitude", &SpatVector::normalize_longitude)
.method("rotate_longitude", &SpatVector::rotate_longitude)
.method("line_merge", &SpatVector::line_merge)
.method("simplify", &SpatVector::simplify)
.method("thin", &SpatVector::thin)
//.method("shared_paths", &SpatVector::shared_paths)
.method("shared_paths", (SpatVector (SpatVector::*)(bool))( &SpatVector::shared_paths))
.method("shared_paths2", (SpatVector (SpatVector::*)(SpatVector, bool))( &SpatVector::shared_paths))
.method("snap", &SpatVector::snap)
.method("snapto", &SpatVector::snapto)
.method("spatial_index_2d", &SpatVector::index_2d)
.method("spatial_index_sparse", &SpatVector::index_sparse)
.field_readonly("is_proxy", &SpatVector::is_proxy )
.field_readonly("read_query", &SpatVector::read_query )
.field_readonly("read_extent", &SpatVector::read_extent )
.field_readonly("geom_count", &SpatVector::geom_count)
.field_readonly("source", &SpatVector::source)
.field_readonly("layer", &SpatVector::source_layer)
.field_readonly("df", &SpatVector::df )
.method("has_error", &SpatVector::hasError)
.method("has_warning", &SpatVector::hasWarning)
.method("getError", &SpatVector::getError)
.method("getWarnings", &SpatVector::getWarnings)
.method("coordinates", &SpatVector::coordinates)
.method("get_geometry", &SpatVector::getGeometry)
.method("get_geometryDF", &get_geometryDF)
.method("get_geometryList", &get_geometryList)
.method("linesList", &SpatVector::linesList)
.method("polygonsList", &SpatVector::polygonsList)
.method("linesNA", &SpatVector::linesNA)
.method("add_column_empty", (void (SpatVector::*)(unsigned dtype, std::string name))( &SpatVector::add_column))
.method("add_column_double", (bool (SpatVector::*)(std::vector<double>, std::string name))( &SpatVector::add_column))
.method("add_column_long", (bool (SpatVector::*)(std::vector<long>, std::string name))( &SpatVector::add_column))
.method("add_column_string", (bool (SpatVector::*)(std::vector<std::string>, std::string name))( &SpatVector::add_column))
.method("add_column_factor", &SpatVector::add_column_factor)
.method("add_column_bool", &SpatVector::add_column_bool)
.method("add_column_time", &SpatVector::add_column_time)
.method("remove_column", (bool (SpatVector::*)(std::string field))( &SpatVector::remove_column))
.method("remove_column", (bool (SpatVector::*)(int i))( &SpatVector::remove_column))
.method("remove_df", &SpatVector::remove_df)
.method("set_df", &SpatVector::set_df)
.method("get_datatypes", &SpatVector::get_datatypes)
.method("set_holes", &SpatVector::set_holes)
.method("get_holes", &SpatVector::get_holes)
.method("remove_holes", &SpatVector::remove_holes)
.method("append", &SpatVector::append)
.method("cbind", &SpatVector::cbind)
.method("rbind", &SpatVector::append)
.method("area", &SpatVector::area)
.method("as_lines", &SpatVector::as_lines)
.method("as_points", &SpatVector::as_points)
.method("couldBeLonLat", &SpatVector::could_be_lonlat)
.method("get_crs", &SpatVector::getSRS)
.method("set_crs", (bool (SpatVector::*)(std::string crs))( &SpatVector::setSRS))
//.method("prj", &SpatVector::getPRJ)
// .method("get_index", &SpatVector::get_index)
.method("distance_self", (std::vector<double> (SpatVector::*)(bool, std::string, const std::string, bool, SpatOptions&))( &SpatVector::distance))
.method("distance_other", (std::vector<double> (SpatVector::*)(SpatVector, bool, std::string, const std::string, bool, SpatOptions&))( &SpatVector::distance))
.method("point_distance", &SpatVector::pointdistance)
// .method("geosdist_self", (std::vector<double> (SpatVector::*)(bool, std::string))( &SpatVector::geos_distance))
// .method("geosdist_other", (std::vector<double> (SpatVector::*)(SpatVector, bool, std::string))( &SpatVector::geos_distance))
.method("extent", &SpatVector::getExtent)
.method("getDF", &getVectorAttributes)
.method("getGeometryWKT", &SpatVector::getGeometryWKT)
.method("isLonLat", &SpatVector::is_lonlat)
.method("length", &SpatVector::length)
.method("nsegments", &SpatVector::nseg)
// .field("srs", &SpatVector::srs, "srs")
.field("messages", &SpatVector::msg)
.property("names", &SpatVector::get_names, &SpatVector::set_names)
.method("nrow", &SpatVector::nrow)
.method("ncol", &SpatVector::ncol)
.method("project", &SpatVector::project)
.method("project_xy", &SpatVector::project_xy)
.method("read", &SpatVector::read)
.method("setGeometry", &SpatVector::setGeometry)
.method("setPointsXY", &SpatVector::setPointsGeometry)
.method("setPointsDF", &SpatVector::setPointsDF)
.method("setLinesStartEnd", &SpatVector::setLinesStartEnd)
.method("size", &SpatVector::size)
.method("subset_cols", ( SpatVector (SpatVector::*)(std::vector<long>))( &SpatVector::subset_cols ))
.method("subset_rows", ( SpatVector (SpatVector::*)(std::vector<long>))( &SpatVector::subset_rows ))
.method("remove_rows", &SpatVector::remove_rows)
.method("type", &SpatVector::type)
.method("multipoint", &SpatVector::is_multipoint)
.method("naGeoms", &SpatVector::naGeoms)
.method("nullGeoms", &SpatVector::nullGeoms)
.method("write", &SpatVector::write)
.method("delete_layers", &SpatVector::delete_layers)
.method("layer_names", &SpatVector::layer_names)
// .method("bienvenue", &SpatVector::bienvenue)
// .method("allerretour", &SpatVector::allerretour)
.method("geos_isvalid", &SpatVector::geos_isvalid)
.method("geos_isvalid_msg", &SpatVector::geos_isvalid_msg)
.method("aggregate", ( SpatVector (SpatVector::*)(std::string, bool))( &SpatVector::aggregate ))
.method("aggregate_nofield", ( SpatVector (SpatVector::*)(bool))( &SpatVector::aggregate ))
.method("disaggregate", &SpatVector::disaggregate)
.method("buffer", &SpatVector::buffer)
// .method("buffer2", &SpatVector::buffer2)
// .method("buffer3", &SpatVector::buffer3)
.method("centroid", &SpatVector::centroid)
.method("point_on_surface", &SpatVector::point_on_surface)
.method("make_valid2", &SpatVector::make_valid2)
.method("flip", &SpatVector::flip)
.method("transpose", &SpatVector::transpose)
.method("shift", &SpatVector::shift)
.method("rescale", &SpatVector::rescale)
.method("rotate", &SpatVector::rotate)
.method("erase_agg", &SpatVector::erase_agg)
.method("erase", ( SpatVector (SpatVector::*)(SpatVector))( &SpatVector::erase ))
.method("erase_self", ( SpatVector (SpatVector::*)(bool))( &SpatVector::erase ))
.method("elongate", &SpatVector::elongate)
.method("gaps", &SpatVector::gaps)
.method("symdif", &SpatVector::symdif)
.method("cover", &SpatVector::cover)
.method("union", ( SpatVector (SpatVector::*)(SpatVector))( &SpatVector::unite ))
.method("union_self", ( SpatVector (SpatVector::*)())( &SpatVector::unite ))
.method("union_unary", &SpatVector::unaryunion)
.method("intersect", &SpatVector::intersect)
.method("delaunay", &SpatVector::delaunay)
.method("voronoi", &SpatVector::voronoi)
// .method("voronoi_sphere", &SpatVector::voronoi_sphere)
.method("hull", &SpatVector::hull)
.method("width", &SpatVector::width)
.method("clearance", &SpatVector::clearance)
.method("mask", &SpatVector::mask)
.method("is_related", &SpatVector::is_related)
.method("related_between", ( std::vector<std::vector<double>> (SpatVector::*)(SpatVector, std::string, bool))( &SpatVector::which_relate))
.method("related_within", ( std::vector<std::vector<double>> (SpatVector::*)(std::string, bool))( &SpatVector::which_relate))
// .method("relate_first", &SpatVector::relateFirst)
// .method("relate_between", ( std::vector<int> (SpatVector::*)(SpatVector, std::string, bool, bool))( &SpatVector::relate ))
.method("relate_within", ( std::vector<int> (SpatVector::*)(std::string, bool))( &SpatVector::relate ))
.method("equals_between", ( std::vector<size_t> (SpatVector::*)(SpatVector, double))( &SpatVector::equals_exact ))
.method("equals_within", ( std::vector<size_t> (SpatVector::*)(bool, double))( &SpatVector::equals_exact ))
.method("crop_ext", ( SpatVector (SpatVector::*)(SpatExtent, bool))( &SpatVector::crop ))
.method("crop_vct", ( SpatVector (SpatVector::*)(SpatVector))( &SpatVector::crop ))
.method("near_between", (SpatVector (SpatVector::*)(SpatVector, bool, const std::string))( &SpatVector::nearest_point))
.method("near_within", (SpatVector (SpatVector::*)(const std::string))( &SpatVector::nearest_point))
// not used?
.method("near_geom", &SpatVector::nearest_geometry)
//.method("knearest", &SpatVector::knearest)
.method("split", &SpatVector::split)
.method("sample", &SpatVector::sample)
.method("sampleGeom", &SpatVector::sample_geom)
.method("remove_duplicate_nodes", &SpatVector::remove_duplicate_nodes)
.method("cross_dateline", &SpatVector::cross_dateline)
.method("fix_lonlat_overflow", &SpatVector::fix_lonlat_overflow)
.method("densify", &SpatVector::densify)
.method("round", &SpatVector::round)
.method("make_CCW", &SpatVector::make_CCW)
;
// class_<SpatRasterSource>("SpatRasterSource")
// .field_readonly("cats", &SpatRasterSource::cats)
/// .field_readonly("has_scale_offset", &SpatRasterSource::has_scale_offset)
// .field_readonly("scale", &SpatRasterSource::scale)
// .field_readonly("offset", &SpatRasterSource::offset)
// .field_readonly("time", &SpatRasterSource::time)
// .field("srs", &SpatRasterSource::srs, "srs")
//.field_readonly("memory", &SpatRasterSource::memory)
// .field_readonly("filename", &SpatRasterSource::filename)
//.field_readonly("driver", &SpatRasterSource::driver)
//.field_readonly("nrow", &SpatRasterSource::nrow)
//.field_readonly("ncol", &SpatRasterSource::ncol)
//.field_readonly("nlyr", &SpatRasterSource::nlyr)
// .field_readonly("extent", &SpatRasterSource::extent)
// .field_readonly("hasWindow", &SpatRasterSource::hasWindow)
// .field_readonly("window", &SpatRasterSource::window)
//.field_readonly("layers", &SpatRasterSource::layers)
//.field_readonly("nlyrfile", &SpatRasterSource::nlyrfile)
//.field_readonly("flipped", &SpatRasterSource::flipped)
//.field_readonly("rotated", &SpatRasterSource::rotated)
// .field_readonly("parameters_changed", &SpatRasterSource::parameters_changed)
//;
class_<SpatVectorProxy>("SpatVectorProxy")
.constructor()
.field("v", &SpatVectorProxy::v )
.method("deepcopy", &SpatVectorProxy::deepCopy, "deepCopy")
;
class_<SpatRaster>("SpatRaster")
.constructor()
// .constructor<std::string, int>()
.constructor<std::vector<std::string>, std::vector<int>, std::vector<std::string>, bool, std::vector<std::string>, std::vector<std::string>, std::vector<size_t>, bool, std::vector<std::string>>()
.constructor<std::vector<size_t>, std::vector<double>, std::string>()
//.finalizer(&SpatRaster_finalizer)
//.method("fromFiles", &SpatRaster::fromFiles)
.method("has_error", &SpatRaster::hasError)
.method("has_warning", &SpatRaster::hasWarning)
.method("getError", &SpatRaster::getError)
.method("getWarnings", &SpatRaster::getWarnings)
.method("getMessage", &SpatRaster::getMessage)
.method("addTag", &SpatRaster::addTag)
.method("getTags", &SpatRaster::getTags)
.method("addLyrTags", &SpatRaster::addLyrTags)
.method("getLyrTags", &SpatRaster::getLyrTags)
.method("getAllFiles", &SpatRaster::getAllFiles)
//.field("name", &SpatRaster::name)
.method("getFileBlocksize", &SpatRaster::getFileBlocksize)
.method("sources_to_disk", &SpatRaster::sources_to_disk, "sources_to_disk")
.method("mem_needs", &SpatRaster::mem_needs, "mem_needs")
.method("spatinit", &SpatRaster::gdalogrproj_init, "init")
.method("addSource", &SpatRaster::addSource, "addSource")
.method("replace", &SpatRaster::replace, "replace")
.method("combineSources", &SpatRaster::combineSources, "combineSources")
.method("compare_geom", &SpatRaster::compare_geom, "compare_geom")
.method("couldBeLonLat", &SpatRaster::could_be_lonlat, "couldBeLonLat")
.method("deepcopy", &SpatRaster::deepCopy, "deepCopy")
.method("hardcopy", &SpatRaster::hardCopy)
.method("get_crs", &SpatRaster::getSRS)
.method("set_crs", (bool (SpatRaster::*)(std::string crs))( &SpatRaster::setSRS))
//.field_readonly("prj", &SpatRaster::prj)
.property("extent", &SpatRaster::getExtent, &SpatRaster::setExtent )
.method("is_rotated", &SpatRaster::is_rotated)
.method("is_flipped", &SpatRaster::is_flipped)
.method("setWindow", &SpatRaster::setWindow, "")
.method("removeWindow", &SpatRaster::removeWindow, "")
.method("hasWindow", &SpatRaster::hasWindow, "")
//.method("getRasterAtt", &getRasterAttributes, "get attributes")
.method("filenames", &SpatRaster::filenames )
// .method("shared_basegeom", &SpatRaster::shared_basegeom)
.field_readonly("rgb", &SpatRaster::rgb)
.field_readonly("rgbtype", &SpatRaster::rgbtype)
.method("setRGB", &SpatRaster::setRGB)
.method("removeRGB", &SpatRaster::removeRGB)
.method("getRGB", &SpatRaster::getRGB)
//.method("setAttIndex", &SpatRaster::setAttrIndex, "setAttrIndex")
//.method("getAttIndex", &SpatRaster::getAttrIndex, "getAttrIndex")
//.method("hasAttributes", &SpatRaster::hasAttributes, "hasAttributes")
//.method("getAttributes", &SpatRaster::getAttributes, "getAttributes")
//.method("setAttributes", &SpatRaster::setAttributes, "setAttributes")
//.method("createAttributes", &SpatRaster::createAttributes, "createAttributes")
.method("makeCategorical", &SpatRaster::makeCategorical)
.method("createCategories", &SpatRaster::createCategories)
.method("hasCategories", &SpatRaster::hasCategories)
.method("getCategories", &SpatRaster::getCategories)
.method("setCategories", &SpatRaster::setCategories)
.method("removeCategories", &SpatRaster::removeCategories)
.method("getLabels", &SpatRaster::getLabels)
.method("setLabels", &SpatRaster::setLabels)
.method("getCatIndex", &SpatRaster::getCatIndex)
.method("setCatIndex", &SpatRaster::setCatIndex)
.method("getScaleOffset", &SpatRaster::getScaleOffset)
.method("setScaleOffset", &SpatRaster::setScaleOffset)
.method("hasColors", &SpatRaster::hasColors)
.method("getColors", &SpatRaster::getColors)
.method("setColors", &SpatRaster::setColors)
.method("removeColors", &SpatRaster::removeColors)
// need to keep this for raster
.property("dataType", &SpatRaster::dataType)
.method("getDataType", &SpatRaster::getDataType)
.method("valueType", &SpatRaster::getValueType)
.method("setValueType", &SpatRaster::setValueType)
.property("hasRange", &SpatRaster::hasRange )
.property("hasValues", &SpatRaster::hasValues )
.property("inMemory", &SpatRaster::inMemory )
.method("isLonLat", &SpatRaster::is_lonlat, "isLonLat")
.method("isGlobalLonLat", &SpatRaster::is_global_lonlat, "isGlobalLonLat")
.property("names", &SpatRaster::getNames)
.method("get_sourcenames_long", &SpatRaster::getLongSourceNames)
.method("set_sourcenames_long", &SpatRaster::setLongSourceNames)
.method("get_sourcenames", &SpatRaster::getSourceNames)
.method("set_sourcenames", &SpatRaster::setSourceNames)
.method("setNAflag", &SpatRaster::setNAflag)
.method("getNAflag", &SpatRaster::getNAflag)
.property("hasUnit", &SpatRaster::hasUnit)
.property("hasDepth", &SpatRaster::hasDepth)
.property("hasTime", &SpatRaster::hasTime)
.property("time", &SpatRaster::getTime)
.property("timestep", &SpatRaster::getTimeStep)
.property("timezone", &SpatRaster::getTimeZone)
.method("settime", &SpatRaster::setTime)
//.property("timestr", &SpatRaster::getTimeStr)
.method("metadata", &SpatRaster::getMetadata)
.property("depth", &SpatRaster::getDepth)
.method("set_depth", &SpatRaster::setDepth)
.method("get_depth_name", &SpatRaster::getDepthName)
.method("set_depth_name", &SpatRaster::setDepthName)
.method("get_depth_unit", &SpatRaster::getDepthUnit)
.method("set_depth_unit", &SpatRaster::setDepthUnit)
.property("units", &SpatRaster::getUnit)
.method("set_units", &SpatRaster::setUnit)
.method("size", &SpatRaster::size, "size")
.method("nrow", &SpatRaster::nrow, "nrow")
.method("ncol", &SpatRaster::ncol, "ncol")
.method("nsrc", &SpatRaster::nsrc, "nsrc" )
.field("messages", &SpatRaster::msg, "messages")
.method("nlyrBySource", &SpatRaster::nlyrBySource, "nlyrBySource" )
.method("lyrsBySource", &SpatRaster::lyrsBySource, "lyrsBySource" )
.method("getBands", &SpatRaster::getBands, "getBands" )
.method("nlyr", &SpatRaster::nlyr, "nlyr" )
.property("origin", &SpatRaster::origin)
.property("range_min", &SpatRaster::range_min )
.property("range_max", &SpatRaster::range_max )
.property("res", &SpatRaster::resolution)
// only if SpatRasterSource is exposed
// .field_readonly("source", &SpatRaster::source )
.method("collapse_sources", &SpatRaster::collapse_sources)
.method("make_vrt", &SpatRaster::make_vrt)
.method("dense_extent", &SpatRaster::dense_extent)
.method("setNames", &SpatRaster::setNames)
.method("setTime", &SpatRaster::setTime)
.method("setDepth", &SpatRaster::setDepth)
.method("setUnit", &SpatRaster::setUnit)
.method("set_resolution", &SpatRaster::setResolution)
.method("subset", &SpatRaster::subset)
.method("subsetSource", &SpatRaster::subsetSource)
.method("cellFromXY", ( std::vector<double> (SpatRaster::*)(std::vector<double>,std::vector<double>, double) )( &SpatRaster::cellFromXY ))
.method("vectCells", &SpatRaster::vectCells)
.method("extCells", &SpatRaster::extCells)
.method("wmean_rast", (SpatRaster (SpatRaster::*)(SpatRaster, bool, SpatOptions&))( &SpatRaster::weighted_mean ))
.method("wmean_vect", (SpatRaster (SpatRaster::*)(std::vector<double>, bool, SpatOptions&))( &SpatRaster::weighted_mean ))
.method("cellFromRowCol", ( std::vector<double> (SpatRaster::*)(std::vector<int_64>,std::vector<int_64>) )( &SpatRaster::cellFromRowCol ))
.method("cellFromRowColCombine", ( std::vector<double> (SpatRaster::*)(std::vector<int_64>,std::vector<int_64>) )( &SpatRaster::cellFromRowColCombine ))
.method("yFromRow", ( std::vector<double> (SpatRaster::*)(const std::vector<int_64>&) )( &SpatRaster::yFromRow ))
.method("xFromCol", ( std::vector<double> (SpatRaster::*)(const std::vector<int_64>&) )( &SpatRaster::xFromCol ))
.method("colFromX", ( std::vector<int_64> (SpatRaster::*)(const std::vector<double>&) )( &SpatRaster::colFromX ))
.method("rowFromY", ( std::vector<int_64> (SpatRaster::*)(const std::vector<double>&) )( &SpatRaster::rowFromY ))
.method("xyFromCell", ( std::vector< std::vector<double> > (SpatRaster::*)(std::vector<double>&) )( &SpatRaster::xyFromCell ))
.method("crds", &SpatRaster::coordinates)
.method("rowColFromCell", ( std::vector< std::vector<int_64> > (SpatRaster::*)(std::vector<double>) )( &SpatRaster::rowColFromCell ))
.method("readStart", &SpatRaster::readStart)
.method("readStop", &SpatRaster::readStop)
.method("readAll", &SpatRaster::readAll)
.method("readValues", &SpatRaster::readValuesR)
.method("getValues", &SpatRaster::getValues)
.method("getBlockSizeR", &getBlockSizeR)
.method("getBlockSizeWrite", &getBlockSizeWrite)
.method("same", &sameObject)
#ifdef useRcpp
.method("setValuesRcpp", &SpatRaster::setValuesRcpp)
#endif
.method("setValues", &SpatRaster::setValues)
.method("replaceCellValues", &SpatRaster::replaceCellValues)
.method("replaceCellValuesLayer", &SpatRaster::replaceCellValuesLayer)
.method("setRange", &SpatRaster::setRange)
.method("writeStart", &SpatRaster::writeStart)
.method("writeStop", &SpatRaster::writeStop)
.method("writeValues", &SpatRaster::writeValues)
.method("writeRaster", &SpatRaster::writeRaster)
.method("canProcessInMemory", &SpatRaster::canProcessInMemory)
.method("chunkSize", &SpatRaster::chunkSize)
// .method("to_memory", &SpatRaster::to_memory, "to_memory")
.method("update_meta", &SpatRaster::update_meta)
.method("adjacentMat", &SpatRaster::adjacentMat)
.method("adjacent", &SpatRaster::adjacent)
.method("aggregate", &SpatRaster::aggregate)
.method("align", &SpatRaster::align)
.method("apply", &SpatRaster::apply)
.method("rapply", &SpatRaster::rapply)
.method("rappvals", &SpatRaster::rappvals)
.method("roll", &SpatRaster::roll)
.method("fill_range", &SpatRaster::fill_range)
.method("arith_rast", (SpatRaster (SpatRaster::*)(SpatRaster, std::string, bool, SpatOptions&) )( &SpatRaster::arith ))
.method("arith_numb", (SpatRaster (SpatRaster::*)(std::vector<double>, std::string, bool, bool,SpatOptions&) )( &SpatRaster::arith))
.method("arith_m", &SpatRaster::arith_m)
.method("rst_area", &SpatRaster::rst_area)
.method("sum_area", &SpatRaster::sum_area)
.method("sum_area_group", &SpatRaster::sum_area_group)
.method("surface_area", &SpatRaster::surfaceArea)
.method("as_points", &SpatRaster::as_points)
// .method("as_points_value", &SpatRaster::as_points_value)
.method("cells_notna", &SpatRaster::cells_notna)
.method("cells_notna_novalues", &SpatRaster::cells_notna_novalues)
.method("as_multipoints", &SpatRaster::as_multipoints)
.method("as_lines", &SpatRaster::as_lines)
.method("as_polygons", &SpatRaster::as_polygons)
.method("polygonize", &SpatRaster::polygonize)
.method("atan2", &SpatRaster::atan_2)
.method("bilinearValues", &SpatRaster::bilinearValues)
.method("patches", &SpatRaster::clumps)
.method("patches2", &SpatRaster::patches)
.method("boundaries", &SpatRaster::edges)
.method("buffer", &SpatRaster::buffer)
.method("gridDistance", &SpatRaster::gridDistance)
.method("costDistance", &SpatRaster::costDistance)
.method("rastDistance", &SpatRaster::distance)
.method("nearest", &SpatRaster::nearest)
.method("vectDistance", &SpatRaster::distance_vector)
.method("rastDirection", &SpatRaster::direction)
.method("vectDirectionRasterize", &SpatRaster::direction_rasterize)
// .method("vectDistanceDirect", &SpatRaster::distance_spatvector)
// .method("vectDistanceRasterize", &SpatRaster::distance_rasterize)
.method("get_tiles_ext", &SpatRaster::get_tiles_extent)
.method("get_tiles_ext_vect", &SpatRaster::get_tiles_extent_vect)
.method("make_tiles", &SpatRaster::make_tiles)
.method("make_tiles_vect", &SpatRaster::make_tiles_vect)
.method("ext_from_rc", &SpatRaster::ext_from_rc)
.method("combineCats", &SpatRaster::combineCats)
.method("droplevels", &SpatRaster::dropLevels)
.method("clamp", &SpatRaster::clamp)
.method("clamp_raster", &SpatRaster::clamp_raster)
.method("clamp_ts", &SpatRaster::clamp_ts)
.method("replaceValues", &SpatRaster::replaceValues)
.method("classify", ( SpatRaster (SpatRaster::*)(std::vector<double>, size_t, unsigned, bool, bool, double, bool, bool, bool, SpatOptions&) )( &SpatRaster::reclassify))
//.method("source_collapse", &SpatRaster::collapse, "collapse")
.method("selRange", &SpatRaster::selRange)
.method("separate", &SpatRaster::separate)
.method("sort", &SpatRaster::sort)
.method("intersect", &SpatRaster::intersect)
.method("cover", ( SpatRaster (SpatRaster::*)(SpatRaster, std::vector<double>, SpatOptions&) )( &SpatRaster::cover))
.method("cover_self", ( SpatRaster (SpatRaster::*)(std::vector<double>, SpatOptions&) )( &SpatRaster::cover))
.method("crop", &SpatRaster::crop)
.method("crop_mask", &SpatRaster::cropmask)
.method("cum", &SpatRaster::cum)
.method("disaggregate", &SpatRaster::disaggregate)
.method("expand", &SpatRaster::extend)
.method("extractCell", &SpatRaster::extractCell)
// .method("extractXY", &SpatRaster::extractXY)
// .method("extractXYFlat", &SpatRaster::extractXYFlat, "extractXYflat")
.method("extractVector", &SpatRaster::extractVector)
.method("extractVectorFlat", &SpatRaster::extractVectorFlat)
.method("extractBuffer", &SpatRaster::extractBuffer)
.method("flip", &SpatRaster::flip)
.method("focal", &SpatRaster::focal)
.method("focalValues", &SpatRaster::focal_values)
.method("count", &SpatRaster::count)
.method("freq", &SpatRaster::freq)
.method("geometry", &SpatRaster::geometry)
.method("get_aggregates", &SpatRaster::get_aggregates)
.method("get_aggregate_dims", &SpatRaster::get_aggregate_dims2)
.method("globalTF", &SpatRaster::globalTF)
.method("mglobal", &SpatRaster::mglobal)
.method("layerCor", &SpatRaster::layerCor)
.method("global_weighted_mean", &SpatRaster::global_weighted_mean)
.method("initf", ( SpatRaster (SpatRaster::*)(std::string, bool, SpatOptions&) )( &SpatRaster::init ), "init fun")
.method("initv", ( SpatRaster (SpatRaster::*)(std::vector<double>, SpatOptions&) )( &SpatRaster::init ), "init value")
.method("is_in", &SpatRaster::is_in)
.method("is_in_cells", &SpatRaster::is_in_cells)
.method("anynan", &SpatRaster::anynan)
.method("nonan", &SpatRaster::nonan)
.method("allnan", &SpatRaster::allnan)
.method("isnan", &SpatRaster::isnan)
.method("countnan", &SpatRaster::countnan)
.method("not_na", &SpatRaster::isnotnan)
.method("isfinite", &SpatRaster::isfinite)
.method("isinfinite", &SpatRaster::isinfinite)
.method("is_true", &SpatRaster::is_true)
.method("is_false", &SpatRaster::is_false)
.method("logic_rast", ( SpatRaster (SpatRaster::*)(SpatRaster, std::string, SpatOptions&) )( &SpatRaster::logic ))
.method("logic_numb", ( SpatRaster (SpatRaster::*)(std::vector<double>, std::string, SpatOptions&) )( &SpatRaster::logic ))
.method("mask_self", ( SpatRaster (SpatRaster::*)(SpatOptions&) )( &SpatRaster::mask))
.method("mask_raster", ( SpatRaster (SpatRaster::*)(SpatRaster&, bool, std::vector<double>, double, SpatOptions&) )( &SpatRaster::mask))
.method("mask_vector", ( SpatRaster (SpatRaster::*)(SpatVector&, bool, double, bool, SpatOptions&) )( &SpatRaster::mask))
.method("math", &SpatRaster::math)
.method("math2", &SpatRaster::math2)
.method("modal", &SpatRaster::modal)
.method("quantile", &SpatRaster::quantile)
.method("rasterize", &SpatRaster::rasterize)
.method("rasterizePointsV", ( SpatRaster (SpatRaster::*)(SpatVector&, std::string, std::vector<double>&, bool, double, SpatOptions&) )( &SpatRaster::rasterizePoints))
.method("rasterizePointsXY", ( SpatRaster (SpatRaster::*)(std::vector<double>&, std::vector<double>&, std::string, std::vector<double>&, bool, double, SpatOptions&) )( &SpatRaster::rasterizePoints))
.method("rasterizeLyr", &SpatRaster::rasterizeLyr)
.method("rasterizeGeom", &SpatRaster::rasterizeGeom)
.method("rasterizeWindow", &SpatRaster::rasterizeWindow)
.method("wincircle", &SpatRaster::win_circle)
.method("winrect", &SpatRaster::win_rect)
.method("rgb2col", &SpatRaster::rgb2col)
.method("rgb2hsx", &SpatRaster::rgb2hsx)
.method("hsx2rgb", &SpatRaster::hsx2rgb)
.method("reverse", &SpatRaster::reverse)
.method("rotate", &SpatRaster::rotate)
//.method("sampleCells", &SpatRaster::sampleCells, "sampleCells")
.method("sampleStratifiedCells", &SpatRaster::sampleStratifiedCells)
.method("sampleRegularRaster", &SpatRaster::sampleRegularRaster)
.method("sampleRowColRaster", &SpatRaster::sampleRowColRaster)