EngqvistLab
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fetch_microbial_growth_temperatures
fetch_microbial_growth_temperatures PublicCode to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.
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DeepET_reps
DeepET_reps PublicAn installable library to get DeepET representations.
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Repositories
- orgtools Public
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
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- yeast_xylanase Public
A bioinformatic analysis was carried out with the goal of identifying carbohydrate-active enzymes in 332 published yeast genomes.
- Tome Public
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
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