LiqTransferOptimizer_v1.0.0
This release contains the code and collected data from the experiments presented in the publication "Optimization of Liquid Handling Parameters for Viscous Liquid Transfers with Pipetting Robots, a “Sticky Situation”" (10.26434/chemrxiv-2023-cbkqh)
Contents
- Bo_liquid_Transfer.py: Contains class used to execute robotic platform actions and optimization algorithms
- MOBO_liquid_handling_paramters.ipynb : Contains three examples of different ways that BO_LiqTransfer can be implemented, this notebooks are representative of the code used to generate the data presented in 10.26434/chemrxiv-2023-cbkqh
- Opentrons_optimization_commands.ipynb: Controls the actions of the Opentrons OT2 platform during the optimization protocol.
- Opentrons_calibration_commands.ipynb : Controls the actions of the Opentrons OT2 platform for the calibration experiment of the best performing liquid handling parameters.
- Library: Contains the json files defining the geometry and location of the labware used during the experiments
- Configs: Contains the configuration files for the control of the in-house liquid transfer platform and weight balance
-Old scripts: Contain previous versions of the optimization notebooks.
Data: Contains the raw data and code to reproduce the plots contained in 10.26434/chemrxiv-2023-cbkqh