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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    968 101

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 683 179

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 481 104

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 414 93

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 352 32

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 315 20

Repositories

Showing 10 of 39 repositories
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 683 179 4 2 Updated Jul 4, 2025
  • meryl Public

    A genomic k-mer counter (and sequence utility) with nice features.

    marbl/meryl’s past year of commit activity
    C 142 14 36 0 Updated Jul 4, 2025
  • meryl-utility Public

    A collection of miscellaneous code used by Meryl, Canu and others.

    marbl/meryl-utility’s past year of commit activity
    C 1 3 0 0 Updated Jul 4, 2025
  • MetaCompass Public

    MetaCompass: Reference-guided Assembly of Metagenomes

    marbl/MetaCompass’s past year of commit activity
    Python 39 11 11 0 Updated Jun 26, 2025
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 352 32 19 0 Updated Jun 26, 2025
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 23 3 0 0 Updated Jun 24, 2025
  • CHM13 Public

    The complete sequence of a human genome

    marbl/CHM13’s past year of commit activity
    968 101 25 (1 issue needs help) 0 Updated Jun 17, 2025
  • HG002-issues Public

    HG002 human reference genome issue tracking and polishing

    marbl/HG002-issues’s past year of commit activity
    10 0 29 0 Updated Jun 3, 2025
  • Primates Public

    Complete assemblies of non-human primate genomes

    marbl/Primates’s past year of commit activity
    50 4 1 0 Updated May 20, 2025
  • ModDotPlot Public
    marbl/ModDotPlot’s past year of commit activity
    Python 151 MIT 12 9 0 Updated May 8, 2025