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Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

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GPL-3.0 license
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maximilianh/multiSub

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Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

Topics

tsv genbank fasta ncbi meta-data ena sars-cov-2 sarscov2 gisaid-uploader gisaid-format gisaid-upload gisaid-xls ncbi-ftp

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License

GPL-3.0 license
Activity

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first release Latest
Feb 16, 2022

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