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Issues6 (6)

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mkpython3/Mutation-Simulator

Number of DEL:ME and INS:ME in translocations

Hi, First, thanks for this great tool! I noticed a discrepancy in the balance of DEL:ME and INS:ME when dealing with translocations in the output VCF file of Mutation-Simulator. When running the tool ...

• aziele
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• 3
·
• Opened 
  on Feb 6, 2024
·
• #11

mkpython3/Mutation-Simulator

Basic mutation rate

Hi, I tried your tool and I feel like I missed something obvious, but results does not match what I was expecting. For example, if I try to mutate half of one genome: mutation-simulator ncbinuc_NC_000913.3.fasta ...

• jsgounot
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• 7
·
• Opened 
  on Mar 14, 2023
·
• #10

mkpython3/Mutation-Simulator

Looping with renaming mutants

Hi, I really like the function of this tool and want to know if there was an option to rename the output sequence. As it stands, the input and output sequences have the same name. additionally, how might ...

• omarkr8
·
• Opened 
  on Dec 27, 2022
·
• #8

mkpython3/Mutation-Simulator

Off by one error in rmt range?

I have an rmt file with a range specified for blocking stretches of N s. However, it has not been blocked successfully if you have a look at the vcf. The mutation has been introduced at the very last base ...

• ink-blot
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• 1
·
• Opened 
  on Sep 14, 2021
·
• #5

mkpython3/Mutation-Simulator

Random Substitutions

• LilyAms
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• Opened 
  on May 4, 2021
·
• #4

mkpython3/Mutation-Simulator

certain ranges not being considered?

Hello! I have the following rmt file: 57-372 sn 0.00990000 in 0.00001620 inl 1 de 0.00001620 del 1 373-576 sn 0.00165000 in 0.00000270 inl 1 de 0.00000270 del 1 577-647 sn 0.00075900 in 0.00000124 inl ...

• grenaud
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• 6
·
• Opened 
  on Mar 22, 2021
·
• #3

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