Repositories list

• bioperl-live

  Public
  Core BioPerl 1.x code

  toolkitbioinformaticsperl+ 1bioperl

  Perl

  •185•309•56•4•Updated Apr 26, 2025Apr 26, 2025

• Bio-SeqIO-tinyseq

  Public
  Perl

  •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• Bio-SearchIO-Writer-BSMLResultWriter

  Public
  BioPerl BSML BLAST Result Writer

  Perl

  •0•1•1•0•Updated Apr 23, 2025Apr 23, 2025

• Bio-SeqIO-locuslink

  Public
  Perl

  •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

• Bio-TreeIO-phyloxml

  Public
  Perl

  •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

• Bio-SeqIO-seqxml

  Public
  Perl

  •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

• Bio-SeqIO-game

  Public
  Perl

  •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

• Bio-EUtilities

  Public
  Low-level OO Perl interface for NCBI's eutils

  Perl

  •6•4•2•0•Updated Apr 10, 2025Apr 10, 2025

• p5-bpwrapper

  Public
  BioPerl scripts and utilities

  Perl

  •

  Other

  •4•11•0•1•Updated Nov 8, 2024Nov 8, 2024

• Bio-DB-SeqFeature

  Public
  Perl

  •1•1•1•0•Updated Sep 27, 2024Sep 27, 2024

• Bio-DB-NCBIHelper

  Public
  BioPerl modules for accessing data from NCBI

  Perl

  •3•0•2•1•Updated Dec 15, 2023Dec 15, 2023

• Bio-Biblio

  Public
  Bio-Biblio

  Perl

  •3•3•0•0•Updated Feb 8, 2023Feb 8, 2023

• Bio-DB-Taxonomy-sqlite

  Public
  Perl

  •0•0•0•0•Updated Apr 1, 2022Apr 1, 2022

• bioperl-run

  Public
  BioPerl wrappers

  Perl

  •

  Other

  •18•36•34•2•Updated Apr 25, 2021Apr 25, 2021

• Bio-Tools-Run-RemoteBlast

  Public
  BioPerl interface to a remote BLAST server

  Perl

  •1•1•0•0•Updated Feb 28, 2021Feb 28, 2021

• Bio-SeqIO-interpro

  Public
  XML-based InterPro parser

  Perl

  •0•2•0•0•Updated Feb 3, 2021Feb 3, 2021

• Bio-SearchIO-hmmer

  Public
  BioPerl parser to HMMER output

  Perl

  •0•1•0•0•Updated Sep 16, 2020Sep 16, 2020

• Bio-FeatureIO

  Public
  Sequence Feature streams

  Perl

  •9•4•8•0•Updated Feb 7, 2020Feb 7, 2020

• Bio-DB-GFF

  Public
  Perl

  •1•0•1•0•Updated Jan 8, 2020Jan 8, 2020

• Bio-Variation

  Public
  Perl

  •0•0•0•0•Updated Jan 8, 2020Jan 8, 2020

• Bio-DB-RefSeq

  Public
  Perl

  •0•0•1•0•Updated Dec 7, 2019Dec 7, 2019

• Bio-DB-SwissProt

  Public
  Perl

  •0•1•0•0•Updated Dec 7, 2019Dec 7, 2019

• Bio-Procedural

  Public
  Procedural interface to a subset of the BioPerl functionality

  Perl

  •0•0•0•0•Updated Dec 5, 2019Dec 5, 2019

• Bio-DB-HIV

  Public
  BioPerl interface to the Los Alamos HIV Sequence Database

  Perl

  •0•0•0•0•Updated Oct 16, 2019Oct 16, 2019

• bioperl.github.io

  Public
  The BioPerl Web site: http://bioperl.org

  CSS

  •9•14•9•0•Updated Aug 29, 2019Aug 29, 2019

• Bio-Restriction

  Public
  BioPerl distribution for restriction enzymes

  Perl

  •1•0•4•1•Updated Jun 17, 2019Jun 17, 2019

• .github

  Public
  Community default repo

  0•0•0•0•Updated May 30, 2019May 30, 2019

• Bio-DB-EMBL

  Public
  BioPerl modules for accessing data from EMBL-EBI

  Perl

  •0•0•1•0•Updated Mar 4, 2019Mar 4, 2019

• Bio-DB-BioFetch

  Public
  Perl

  •0•0•1•0•Updated Feb 19, 2019Feb 19, 2019

• bioperl-pipeline

  Public
  Analysis pipelines from wrappers

  Perl

  •

  Other

  •2•3•0•0•Updated Feb 14, 2019Feb 14, 2019