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bioinformatics-software

Here are 6 public repositories matching this topic...

Multiomics-Analytics-Group / vuegen

VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.

python data-visualization reports developer-tools quarto streamlit bioinformatics-software

Updated Jul 3, 2025
Python

SaniyaKhullar / NetREm

Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation

transcription-factors protein-interaction network-regularization gene-expression-profiles transcriptional-regulatory-network single-cell-analysis ppi-networks network-lasso multiomics-data gene-regulatory-network-inference bioinformatics-software transcription-factor-coordination regularization-embeddings regression-embeddings predictor-interactions network-guided-regression regression-with-prior-knowledge network-based-inference netrem

Updated May 18, 2024
Jupyter Notebook

mrzResearchArena / BLAST

Easy Way to Generate PSSM from the FASTA Sequences

bioinformatics computational-biology bioinformatics-software

Updated Dec 14, 2023
Jupyter Notebook

Multiomics-Analytics-Group / vuecore

Visualization library for omics data

python data-visualization developer-tools plotting omics bioinformatics-software

Updated Jul 7, 2025
Python

mikeph52 / BioGenie

BioGenie is a complete bioinformatics command line tool, written in C++.

bioinformatics rna-seq dna protein dna-sequences bioinformatics-scripts bioinformatics-tool bioinformatics-software

Updated Jul 4, 2025
C++

ulysseLeclanche / Abso_bio-tools

Assessing bioinformatics software annotations: bio.tools case-study

edam biotools semantic-annotations bioinformatics-software

Updated Jun 13, 2025
Jupyter Notebook

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