Estimate cyanobacteria density based on Sentinel-2 satellite imagery
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Aug 20, 2025 - Python
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cyanobacteria
Here are 23 public repositories matching this topic...
CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing
metabarcoding taxonomy-assignment taxonomic-classification amplicon-datasets amplicon-sequencing cyanobacteria taxonomy-database
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Oct 9, 2024
This is the repository for the CTCB project
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Jun 4, 2024 - Jupyter Notebook
NinjaPBR - An open-source photobioreactor to study circadian growth in microalgae and cyanobacteria
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Jul 15, 2019 - PostScript
Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002
machine-learning multiobjective-optimization metabolic-network flux-balance-analysis cyanobacteria multiomics
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Nov 10, 2023 - MATLAB
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
bioinformatics help-wanted rna bacteria phylogeny phycology rrna rna-folding cyanobacteria 16s-rrna 23s 16s-seq rnafolding 16s-23s
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Jan 12, 2023 - Python
Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client
automation psi measurement optimization-tools algae photobioreactor optimization-algorithms photosynthesis respiration growth-rate cyanobacteria microalgae growth-characterization protocol-scripting
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Aug 17, 2022 - JavaScript
The influence of time scale on autocorrelation as an early warning indicator of regime shift
frequency scale time-series autocorrelation bifurcation early-warnings critical-slowing-down applied-ecology sonde high-frequency algal-bloom cyanobacteria bga phycocyanin chlorophyll hopf eutrophication
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Aug 10, 2021 - R
Graphical User-interface for the NinjaPBR Photobioreactor, based on wxPython.
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Dec 15, 2015 - Python
RNA-seq data analysis for the role of a cryptic tRNA gene operon in the recovery from translational stress in the cyanobacterium Nostoc using bioconductor R packages
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Nov 9, 2020 - R
A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells
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Jan 17, 2023 - MATLAB
Automated DubSeq data analysis
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Nov 19, 2021 - Python
A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells
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Jan 17, 2023 - MATLAB
This is a simple static research lab website template which can be used by college students / professors.
evolution algae cyanobacteria cyanopal evolution-cyanobacteria-lab cyanobacteria-olomouc algae-olomouc-lab microcoleus
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Oct 22, 2024 - HTML
Code for a pipeline to analyse phase contrast timelapse images of Cyanobacteria
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Jun 27, 2025 - Jupyter Notebook
In this repository, you find code and explanations to quantify the net community production (NCP) during a cyanobacteria bloom in the Baltic Sea through vertically resolved pCO2 measurements.
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Jul 2, 2021 - R
An application that can create a stream of all the tweets around the world, being posted in real time, relating to the keywords of the cyanotracker project. Also, a map props up highlighting all the tweet locations.
twitter stream tweepy tweet google-maps-api keyword-extraction cyanobacteria tweet-locations map-props habs
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Apr 29, 2021 - Python
Analysis of cyanobacteria 16S eDNA sequences obtained from stormwater management ponds using QIIME 2 and R.
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Jul 30, 2025 - R
The code aims at reproducing the analyses and figures presented in Louchart et al. (2025). Individual-level trait responses in natural cyanobacterial communities. The manuscript has been submitted to a journal.
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Jul 21, 2025 - R
Meta-Bio-Cargo predict #Ru-Bi-CO-S protein
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Mar 20, 2021 - Rust
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