Skip to content
View joewandy's full-sized avatar
63 followers · 46 following

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2

Organizations

@glasgowcompbio

Block or report joewandy

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
joewandy/README.md

Hi 👋 I'm Joe.

I work on applying machine learning in computational biology domain, mostly in metabolomics and multi-omics data analysis.

All my work are available on this GitHub. I also published in computational biology and bioinformatics journals journals, as well as presenting in workshops and conferences. I don't do as much of that anymore in the industry, so most of my open-source works can be found in this GitHub profile.

I’m currently working on :

  • Discovering substructures in tandem mass spectrometry data using MS2LDA.
  • Omics data integration framework through GraphOmics and pyMultiOmics.

Other past projects that you may find interesting:

  • Developing novel fragmentation strategies in metabolomics via ViMMS and ViMMS-gym.
  • Bayesian adaptive clinical trial design via pyBasket.

📫 How to reach me: joewandy@gmail.com, or via twitter.

Pinned Loading

  1. vdhooftcompmet/MS2LDA Public

    Unsupervised Substructure Discovery using Topic Modelling with Automated Annotation.

    Jupyter Notebook 5

  2. glasgowcompbio/vimms Public

    A programmable and modular LC/MS simulator in Python

    Python 22 7

  3. glasgowcompbio/GraphOmics Public

    Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.

    Jupyter Notebook 13 2

  4. glasgowcompbio/PALS Public

    Ranking metabolite (and other omics sets) by their activity levels via SVD

    Jupyter Notebook 2 1