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The deepTools ecosystem

deepTools and related packages

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  1. pyGenomeTracks pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 824 121

  2. deepTools deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 724 217

  3. HiCExplorer HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 251 72

  4. pyBigWig pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    C 233 53

  5. py2bit py2bit Public

    A python library for accessing 2bit files

    C 19 9

  6. HiCBrowser HiCBrowser Public

    Simple web browser to visualize HiC tracks

    JavaScript 18 5

Repositories

Showing 10 of 13 repositories
  • deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 724 217 151 16 Updated Jul 8, 2025
  • HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 251 GPL-3.0 72 146 (1 issue needs help) 0 Updated Jun 20, 2025
  • py2bit Public

    A python library for accessing 2bit files

    C 19 MIT 9 0 0 Updated Jan 21, 2025
  • pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    C 233 MIT 53 12 0 Updated Jan 17, 2025
  • pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 824 GPL-3.0 121 26 7 Updated Jul 10, 2024
  • HiCMatrix Public
    Python 13 GPL-3.0 8 0 0 Updated Apr 30, 2024
  • github-actions Public

    Play around with github actions

    JavaScript 0 MIT 1 0 12 Updated Aug 16, 2023
  • Knight-Ruiz-Matrix-balancing-algorithm Public
    C++ 10 4 5 1 Updated Apr 13, 2021
  • HiCBrowser Public

    Simple web browser to visualize HiC tracks

    JavaScript 18 GPL-2.0 5 6 2 Updated Dec 12, 2019
  • hicBuildMatrixCpp Public

    C++ implementation of hicBuildMatrix

    C++ 2 MIT 2 0 0 Updated Oct 16, 2019
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