issues Search Results · repo:populse/capsul language:Python
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inpopulse/capsul (press backspace or delete to remove)When using bv maker doc, the process sometimes hangs indefinitely, seemingly while running some Ipython code:
$ ps -wwfH -u a-sac-ns-brainvisa
UID PID PPID C STIME TTY TIME CMD
a-sac-n+ ...
bug
ylep
- 3
- Opened on Mar 5, 2024
- #358
https://github.com/populse/capsul/blob/fbec45b48c464da8001d72478ed449ece7125c42/capsul/process/process.py#L942
https://github.com/populse/capsul/blob/fbec45b48c464da8001d72478ed449ece7125c42/capsul/process/process.py#L1077-L1086 ...
3.0
DimitriPapadopoulos
- 1
- Opened on Mar 4, 2024
- #355
Fix flake8-bugbear issue: B023 function-uses-loop-variable
https://github.com/populse/capsul/blob/fbec45b48c464da8001d72478ed449ece7125c42/capsul/dataset.py#L1366
3.0
DimitriPapadopoulos
- 1
- Opened on Mar 4, 2024
- #354
Implement this [repo-review](https://learn.scientific-python.org/development/guides/repo-review/?repo=populse%2Fcapsul
branch=3.0) recommendation:
RF101: Bugbear must be selected Must select the flake8-bugbear ...
3.0
DimitriPapadopoulos
- 1
- Opened on Mar 4, 2024
- #351
I m trying to work on metadata and completion for the Morphologist pipeline. Once I have a ProcessMetadata instance for
the pipeline (metadata = ProcessMetadata(pipeline, execution_context)), I set values ...
3.0
bug
denisri
- 1
- Opened on Jan 23, 2024
- #348
The following code raises an error. This code is extracted from a Notebook. The part that raises the exception can be
executed if the beginning of the script is removed. I do not know yet what is the exact ...
3.0
sapetnioc
- 2
- Opened on Dec 6, 2023
- #341
Config modules can provide a static method init_execution_context in order to initialize things for execution. This
method is called from the constructor of ExecutionContext. The context is created in ...
3.0
bug
denisri
- 4
- Opened on Nov 24, 2023
- #338
In Capsul v2, we could use capsul.in_context.fsl, capsul.in_context.spm, capsul.in_context.freesurfer etc to easily run
these external software using their configuration. These modules have been removed ...
3.0
enhancement
question
denisri
- 1
- Opened on Nov 20, 2023
- #335
This is related to #328 but I believe it deserves a separate issue: when a Capsul process does not have any associated
metada_schemas attribute, the Axon bindings currently fail to load it:
Traceback ...
3.0
bug
ylep
- 2
- Opened on Nov 17, 2023
- #329
Any new process, pipeline, or toolbox will likely come with its metadata and completion schemas. We must decide,
implement and document a way to discover and parse them, and/or to switch to the correct ...
3.0
question
denisri
- Opened on Nov 16, 2023
- #328

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