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inpopulse/capsul (press backspace or delete to remove)

When using bv maker doc, the process sometimes hangs indefinitely, seemingly while running some Ipython code: $ ps -wwfH -u a-sac-ns-brainvisa UID PID PPID C STIME TTY TIME CMD a-sac-n+ ...
bug
  • ylep
  • 3
  • Opened 
    on Mar 5, 2024
  • #358

https://github.com/populse/capsul/blob/fbec45b48c464da8001d72478ed449ece7125c42/capsul/process/process.py#L942 https://github.com/populse/capsul/blob/fbec45b48c464da8001d72478ed449ece7125c42/capsul/process/process.py#L1077-L1086 ...
3.0
  • DimitriPapadopoulos
  • 1
  • Opened 
    on Mar 4, 2024
  • #355

Fix flake8-bugbear issue: B023 function-uses-loop-variable https://github.com/populse/capsul/blob/fbec45b48c464da8001d72478ed449ece7125c42/capsul/dataset.py#L1366
3.0
  • DimitriPapadopoulos
  • 1
  • Opened 
    on Mar 4, 2024
  • #354

Implement this [repo-review](https://learn.scientific-python.org/development/guides/repo-review/?repo=populse%2Fcapsul branch=3.0) recommendation: RF101: Bugbear must be selected Must select the flake8-bugbear ...
3.0
  • DimitriPapadopoulos
  • 1
  • Opened 
    on Mar 4, 2024
  • #351

I m trying to work on metadata and completion for the Morphologist pipeline. Once I have a ProcessMetadata instance for the pipeline (metadata = ProcessMetadata(pipeline, execution_context)), I set values ...
3.0
bug
  • denisri
  • 1
  • Opened 
    on Jan 23, 2024
  • #348

The following code raises an error. This code is extracted from a Notebook. The part that raises the exception can be executed if the beginning of the script is removed. I do not know yet what is the exact ...
3.0
  • sapetnioc
  • 2
  • Opened 
    on Dec 6, 2023
  • #341

Config modules can provide a static method init_execution_context in order to initialize things for execution. This method is called from the constructor of ExecutionContext. The context is created in ...
3.0
bug
  • denisri
  • 4
  • Opened 
    on Nov 24, 2023
  • #338

In Capsul v2, we could use capsul.in_context.fsl, capsul.in_context.spm, capsul.in_context.freesurfer etc to easily run these external software using their configuration. These modules have been removed ...
3.0
enhancement
question
  • denisri
  • 1
  • Opened 
    on Nov 20, 2023
  • #335

This is related to #328 but I believe it deserves a separate issue: when a Capsul process does not have any associated metada_schemas attribute, the Axon bindings currently fail to load it: Traceback ...
3.0
bug
  • ylep
  • 2
  • Opened 
    on Nov 17, 2023
  • #329

Any new process, pipeline, or toolbox will likely come with its metadata and completion schemas. We must decide, implement and document a way to discover and parse them, and/or to switch to the correct ...
3.0
question
  • denisri
  • Opened 
    on Nov 16, 2023
  • #328
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