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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.4k 435

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 284 47

  3. UNI UNI Public

    Pathology Foundation Model - Nature Medicine

    Jupyter Notebook 513 67

  4. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Python 227 24

  5. CONCH CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    Python 376 33

  6. HEST HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    Python 289 27

Repositories

Showing 10 of 34 repositories
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT’s past year of commit activity
    Python 284 47 21 (1 issue needs help) 5 Updated Jul 4, 2025
  • Patho-Bench Public

    Standardized benchmark for computational pathology foundation models.

    mahmoodlab/Patho-Bench’s past year of commit activity
    Python 85 15 3 0 Updated Jun 20, 2025
  • MIL-Lab Public

    Standardized initialization and loading of pretrained MIL models

    mahmoodlab/MIL-Lab’s past year of commit activity
    29 1 2 0 Updated Jun 11, 2025
  • KRONOS Public

    Foundation Model for Multiplex Spatial Proteomic Images

    mahmoodlab/KRONOS’s past year of commit activity
    Jupyter Notebook 63 9 5 1 Updated Jun 6, 2025
  • HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    mahmoodlab/HEST’s past year of commit activity
    Python 289 27 14 1 Updated May 3, 2025
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,368 GPL-3.0 435 31 9 Updated Apr 14, 2025
  • UNI Public

    Pathology Foundation Model - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 513 67 25 2 Updated Mar 26, 2025
  • CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 376 33 9 2 Updated Mar 26, 2025
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Python 227 24 2 0 Updated Mar 17, 2025
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 85 12 1 0 Updated Feb 22, 2025
View all repositories

People

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