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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 9 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 7

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 367 repositories
  • Bonsai.AllenNeuralDynamics Public

    A repository with Bonsai packages used in AIND

    C# 0 0 10 0 Updated Mar 23, 2025
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    Python 3 MIT 1 17 (1 issue needs help) 1 Updated Mar 23, 2025
  • aind-analysis-arch-result-access Public

    accessing results from aind analysis architecture

    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 22, 2025
  • lamf-analysis Public

    Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean

    Jupyter Notebook 1 MIT 0 21 1 Updated Mar 22, 2025
  • aind-analysis-job-dispatch Public

    Capsule to create the input job model for analysis wrapper

    Dockerfile 0 MIT 0 2 1 Updated Mar 22, 2025
  • Python 0 MIT 0 7 (1 issue needs help) 1 Updated Mar 22, 2025
  • harp.device.cuttlefish-fip Public Forked from AllenNeuralDynamics/harp.device.cuttlefish

    an octal, TTL input/output device with programmable square wave output for fiber photometry.

    C# 0 1 0 0 Updated Mar 22, 2025
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    Python 0 MIT 2 30 4 Updated Mar 22, 2025
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 5 MIT 4 104 (1 issue needs help) 5 Updated Mar 22, 2025
  • aind-analysis-arch-pipeine-dynamic-foraging Public

    CO pipeline for dynamic foraging (V2.0)

    Nextflow 0 MIT 0 1 0 Updated Mar 22, 2025