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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

Popular repositories Loading

  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 909 242

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 267 46

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 53 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 28 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 160 repositories
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    Python 8 Apache-2.0 2 667 15 Updated Mar 27, 2025
  • tanagra Public

    Repo for the Tanagra service being developed by the All of Us DRC

    Java 2 BSD-3-Clause 1 0 9 Updated Mar 27, 2025
  • jade-data-repo-ui Public

    UI for the Jade Data Repo

    TypeScript 4 BSD-3-Clause 1 0 1 Updated Mar 27, 2025
  • terra-ui Public

    Web user interface for the Terra platform

    TypeScript 53 BSD-3-Clause 21 145 9 Updated Mar 27, 2025
  • consent Public

    Broad Institute Data Use Oversight System

    Java 11 BSD-3-Clause 2 0 3 Updated Mar 27, 2025
  • data-browser Public
    Jupyter Notebook 11 Apache-2.0 4 96 0 Updated Mar 27, 2025
  • terra-notebook-utils Public

    Utilities for the Terra notebook environment.

    Python 8 MIT 7 19 1 Updated Mar 27, 2025
  • findable-ui Public
    TypeScript 1 Apache-2.0 0 26 2 Updated Mar 27, 2025
  • jade-data-repo Public

    The Terra Data Repository built by the Jade team.

    Java 13 BSD-3-Clause 5 0 2 Updated Mar 26, 2025
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 909 Apache-2.0 242 394 (1 issue needs help) 13 Updated Mar 26, 2025
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