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index.html
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<!DOCTYPE html>
<meta charset="utf-8">
<link rel="icon"
href="src/images/fav.ico" />
<head>
<title>BioRadar</title>
<link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.8.1/css/all.css" integrity="sha384-50oBUHEmvpQ+1lW4y57PTFmhCaXp0ML5d60M1M7uH2+nqUivzIebhndOJK28anvf" crossorigin="anonymous">
<script src="https://kit.fontawesome.com/6ed220eb7a.js" crossorigin="anonymous"></script>
<script src="src/lib/jquery-3.3.1.js"></script>
<script src="src/lib/jquery-ui.js"></script>
<!--<script src="src/lib/jquery.dd.js"></script>-->
<!-- Compiled and minified CSS -->
<script src="src/lib/jBox.all.min.js"></script>
<!--<link href="src/style/jBox.all.min.css" rel="stylesheet">-->
<link href="https://fonts.googleapis.com/icon?family=Material+Icons" rel="stylesheet">
<link href="https://fonts.googleapis.com/css?family=Staatliches" rel="stylesheet">
<link href="https://fonts.googleapis.com/css?family=EB+Garamond&display=swap" rel="stylesheet">
<link rel="stylesheet" href="src/style/jquery-ui.theme.css">
<link rel="stylesheet" href="src/style/jquery-ui.structure.css">
<link rel="stylesheet" href="src/style/materialize.css">
<link rel="stylesheet" href="src/style/customicon.css">
<link href="src/style/jquery.dataTables.css" rel="stylesheet" type="text/css" />
<link href="src/style/theme.css" rel="stylesheet" type="text/css" />
<link href="src/style/mainv1.css" rel="stylesheet" type="text/css" />
<link href="src/style/main.css" rel="stylesheet" type="text/css" />
<link rel="stylesheet" href="src/style/mCustomSCrollbar/jquery.mCustomScrollbar.css" />
<!--<link rel="stylesheet" href="src/style/custom-select.css" />-->
<link rel="stylesheet" href="src/style/nouislider.css" />
<!--<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.11.1/jquery.min.js"></script>-->
<script src="src/lib/mCustomScrollbar/jquery.mCustomScrollbar.concat.min.js"></script>
<!--<script src="src/lib/custom-select.min.js"></script>-->
<script src="src/lib/nouislider.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/materialize/1.0.0/js/materialize.min.js"></script>
<!--<script src="src/lib/underscore-min.js"></script>-->
<script src="src/lib/lodash.min.js"></script>
<script src="src/lib/simple-statistics.min.js"></script>
<script src="https://cdn.jsdelivr.net/npm/sortablejs@latest/Sortable.min.js"></script>
<script src="src/lib/jquery.dataTables.min.js"></script>
<!--<script src="js/select.js"></script>-->
<script src="src/lib/TimerInterval.js"></script>
<script src="src/script/kegg.js"></script>
<!--<link rel="preload" href="https://idatavisualizationlab.github.io/HPCC/HPCViz/images/TTUlogo.png" as="image" media="(height:16%)">-->
</head>
<body text="black" id="mainBody" class="light">
<div class="cover">
<div class="progressDiv hidden">
<h6 class="progressText spinnerC center" style="top: calc(50% - 15px);" >saving data...</h6>
<div class="progress spinnerC center" style="width: 70%;">
<div class="determinate" style="width: 0%"></div>
</div>
</div>
<div class="spinnerC center" id="loadingSpinner" >
<h5 class="spinnerC center status" style="top: 60px; min-width: 300px;" >loading data...</h5>
</div>
</div>
<nav class="pushpin-demo-nav" data-target="blue">
<div class="nav-wrapper" id="header">
<a href="#" data-target="mobile-demo" class="sidenav-trigger"><i class="material-icons">menu</i></a>
<!--<div class="brand-logo center col s12 inline" >-->
<!--Parallel Coordinates-->
<!--</div>-->
<ul id="nav-mobile" class="left hide-on-med-and-down">
<li ><a href="http://www.depts.ttu.edu/hpcc/" class="logoLink"><img src="https://idatavisualizationlab.github.io/HPCC/HPCViz/images/TTUlogo.png" alt="TTU"></a></li>
<li class="summaryText1" style="font-family: 'ITC Charter W01',Georgia,Garamond,serif;"> </li>
<li class ="currentDate center-align" style="font-size: 14px"></li>
</ul>
<ul class="right">
<!--<li><a href="https://idatavisualizationlab.github.io/HPCC/HiperView/HPCC_VR/index.html">Virtual Reality</a></li>-->
<li class="col">
<ul class="tabs">
<li class="tab"><a href="#video">Video</a></li>
<li class="tab"><a class="active" href="#demo">BioRadar</a></li>
</ul>
</li>
<li class="nav__menu">Other Links
<ul class="nav__menu-lists nav__menu--2-lists">
<li class="nav__menu-items"><a href="https://idatavisualizationlab.github.io/N/BioCoordinates/index.html">Bio Coordinates</a></li>
<!--<li class="nav__menu-items"><a href="https://idatavisualizationlab.github.io/HPCC/ParallelCoordinates/index.html">2. Parallel Coordinates</a></li>-->
<!--<li class="nav__menu-items"><a href="https://idatavisualizationlab.github.io/HPCC/PhaseSpace/index.html">3. Phase Space</a></li>-->
<!--<li class="nav__menu-items"><a href="https://idatavisualizationlab.github.io/HPCC/HiperView/HPCC_VR/index.html">4. Virtual Reality</a></li>-->
<!--<li class="nav__menu-items"><a href="https://idatavisualizationlab.github.io/HPCC/clusterDemo/index.html">5. ClusteringView</a></li>-->
</ul>
</li>
<li><a href="#!" value="light" id = "DarkTheme" class="btn waves-effect waves-effect waves-yellow">
<i class="material-icons left">brightness_6</i><span>Dark</span></a></li>
</ul>
</div>
</nav>
<ul class="sidenav " id="mobile-demo">
<h5></h5>
<li><a href="http://www.depts.ttu.edu/hpcc/"><img src="https://idatavisualizationlab.github.io/HPCC/HPCViz/images/TTUlogo.png" alt="Texas Tech University" class="avatar"></a></li>
<li><a href="https://idatavisualizationlab.github.io/HPCC/HiperView/demo.html">HiperView</a></li>
<li><a href="https://idatavisualizationlab.github.io/HPCC/HiperView/HPCC_VR/index.html">Virtual Reality</a></li>
<li><a href="https://idatavisualizationlab.github.io/HPCC/ParallelCoordinates/index.html">Parallel Coordinates</a></li>
</ul>
<div id='datainformation'>
<table>
<tbody>
<tr><td>Filename:</td><td class="filename"></td></tr>
<!--<tr><td>Time range:</td><td class="timerange"></td></tr>-->
<!--<tr><td>Time interval:</td><td class="interval"></td></tr>-->
<!--<tr><td>Total time step:</td><td class="totalstep"></td></tr>-->
<!--<tr><td>#Hosts:</td><td class="hostsnum"></td></tr>-->
<tr><td>#Conditions:</td><td class="metrics"></td></tr>
<tr><td>#Genes:</td><td class="datanum"></td></tr>
</tbody>
</table>
</div>
<div id="mySidenav" class="sidenavs">
<div class="row s12">
<ul class="collapsible expandable">
<!--<li>-->
<!--<div class="collapsible-header search-wrapper focused">-->
<!--<input type="text" id="search" placeholder="Search Racks..." class="inputHolder">-->
<!--<i class="material-icons">search</i>-->
<!--</div>-->
<!--<div class="collapsible-body"><span>Resevered for hierarchy.</span></div>-->
<!--</li>-->
<li class="settingContain active no_padding">
<div class="collapsible-header" > <i class="material-icons">settings</i> <span>Setting</span>
<div class="informationHolder valign-wrapper" style="margin-left: 5px ">
<!--<div id='datainformation' class="informationDetail card">-->
<!--<table>-->
<!--<tbody>-->
<!--<tr><td>Filename:</td><td class="filename"></td></tr>-->
<!--<tr><td>Time range:</td><td class="timerange"></td></tr>-->
<!--<tr><td>Time interval:</td><td class="interval"></td></tr>-->
<!--<tr><td>Total time step:</td><td class="totalstep"></td></tr>-->
<!--<tr><td>#Hosts:</td><td class="hostsnum"></td></tr>-->
<!--</tbody>-->
<!--</table>-->
<!--</div>-->
</div>
<i class="material-icons expand">chevron_right</i>
</div>
<div class="collapsible-body">
<div class="row valign-wrapper">
<label for="datacom" class="col s4"> Dataset</label>
<select id="datacom" class="col s7">
<option value="differentially_expressed_genes" ven="read_data_for_venn" >differentially_expressed_genes</option>
<option value="differentially_expressed_genes_all" ven="read_data_for_venn" selected >differentially_expressed_genes wt&stop1(5 axis)</option>
</select>
<div class="col s1">
<button class="information" data-target='datainformation' data-title='Dataset information' >i</button>
</div>
</div>
<div class="row s12 valign-wrapper hide">
<label for="control" class="col s4"> Simulation control</label>
<div class="col s8" id="control" style="padding-left: 0px;padding-right: 0px;">
<button onclick="pauseRequest()" value = false class ="menuBtn pause"><i class="fas fa-pause pauseicon"></i></button>
<button onclick="fastForwardRequest()" class ="menuBtn" style="background-color: #ffd;"><i class="fas fa-forward pauseicon"></i></button>
<button onclick="extremefastForwardRequest()" class ="menuBtn" style="background-color: #ffd700;"><i class="fas fa-fast-forward"></i></i></button>
<button onclick="resetRequest()" class ="menuBtn rotatehover" style="background-color: #ddf;"><i class="fas fa-sync-alt pauseicon"></i></button>
</div>
</div>
<!--<label for="datacom" class="col s5"> DatasetInput: </label>-->
<div class="row s12 valign-wrapper hidden">
<input id="data_input_file" class="none" type="file" multiple/>
</div>
<div class="row s12 valign-wrapper hide">
<label for="datasetsSelect" class="col s4 hide"> Visualizing</label>
<div class='dropdown-trigger col s8' href='#' data-target='datasetsSelect' id="datasetsSelectTrigger">
<img src="" class="circle">
<span class="title"></span>
<i class="material-icons right">arrow_drop_down</i>
</div>
<ul id="datasetsSelect" class="col collection dropdown-content">
</ul>
</div>
<div class="row s12 valign-wrapper hide">
<label for="summaryType_control" class="col s4 hide"> Summary type</label>
<select id="summaryType_control" class="col s8">
<option value="Boxplot">Boxplot</option>
<option value="Scatterplot" >Scatterplot</option>
<option value="Radar" selected="selected">Radar Groups</option>
<option value="RadarSummary">Radar Summary</option>
</select>
</div>
<div class="row s12 valign-wrapper">
<label for="compDisplay_control" class="col s4"> Visualizing</label>
<select id="compDisplay_control" class="col s7">
<!--<optgroup label="Snapshot">-->
<!--<option value="pie">Individual Pie chart</option>-->
<!--<option value="radar" >Individual Radar chart </option>-->
<!--<option value="radar_cluster" selected="selected">Major group</option>-->
<!--</optgroup>-->
<!--<optgroup label="Timeline">-->
<!--<option value="timeline" value2 = "single">Timeline - Individual host</option>-->
<!--<option value="timeline" value2 = "groupWithJob">Timeline - Group by similarity wrt jobs</option>-->
<!--<option value="timeline" value2 = "group">Timeline - Group by similarity</option>-->
<!--</optgroup>-->
<!--<optgroup label="Bundle">-->
<!--<option value="bundle" value2 = "single">Bundle - Individual host</option>-->
<!--<option value="bundle" value2 = "groupWithJob">Bundle - Group by similarity wrt jobs</option>-->
<!--<option value="bundle" value2 = "group">Bundle - Group by similarity</option>-->
<!--</optgroup>-->
<!--<optgroup label="reduceDim">-->
<option value="reduceDim" value2 = "tsne">t-SNE</option>
<option value="reduceDim" selected value2 = "pca">PCA</option>
<option value="reduceDim" value2 = "umap">UMAP</option>
<!--</optgroup>-->
</select>
<div class="col s1">
<!--<button class="information waves-effect waves-light" data-image="hostpresent.gif" data-title="Grouping options are recommended for a large number of hosts.">?</button>-->
</div>
</div>
<div class="row s12 hide">
<label for="jobControl" class="col s4"> </label>
<div class="switch col s8 no_magrin no_padding" id="jobControl">
<label class="col s12 left-align">
<input id="jobIDCluster_control" type="checkbox" class="filled-in" checked="checked">
<span >Group jobs by similar schedules</span>
</label>
<label class="col s12 left-align">
<input id="jobTable_control" type="checkbox" class="filled-in">
<span >Metrics Table</span>
</label>
<label class="col s12 left-align">
<input id="colorConnection_control" type="checkbox" class="filled-in">
<span >Color links by user</span>
</label>
<label class="col s12 left-align">
<input id="hideUnchange_control" type="checkbox" class="filled-in timelineTool" disabled="disabled">
<span >Hide stable hosts </span>
</label>
<label class="col s12 left-align">
<label>
<input id="jobOverlay" type="checkbox" class="filled-in timelineTool" disabled="disabled">
<span >Overlay jobs info on timeline</span>
</label>
<div class="hide" id="legend" style="color:black;">
<div class="col s12" style="background-color: #e4e4e4;border-radius: 7px;padding: 0">
<div class="col s4">
<span class="col s3" style="padding-right: 0;font-weight: bold">|</span>
<span class="col s9">submit</span>
</div>
<div class="col s4">
<span class="col s3" style="padding-right: 0;font-weight: bold">></span>
<span class="col s9">start</span>
</div>
<div class="col s4">
<span class="col s3" style="padding-right: 0;font-weight: bold"><</span>
<span class="col s9">end</span>
</div>
</div>
</div>
</label>
</div>
</div>
<div class="valign-wrapper row no-pad-left timelineTool hide">
<label class="col s4">Horizontal zoom</label>
<div class=" col s5" style="padding-left: 4px;">
<div id="stepSize_control" class="timelineTool"></div>
</div>
<div class=" col s3"></div>
</div>
<div class="valign-wrapper row no-pad-left timelineTool hide">
<label class="col s4">Significant threshold</label>
<div class=" col s5" style="padding-left: 4px;">
<div id="suddenGroup_control" class="timelineTool"></div>
</div>
<div class=" col s3"></div>
</div>
<div class="row s12 valign-wrapper hide">
<label for="chartType_control" class="col s4 hide"> Chart type</label>
<select id="chartType_control" class="col s8">
<option value="Heatmap">Heatmap</option>
<option value="Area Chart">Area Chart</option>
<option value="T-sne Chart" selected="selected">t-SNE Chart</option>
</select>
</div>
<!--<div class="row s12 valign-wrapper">-->
<!--<div id="legendHolder" class="legendHolder">-->
<!--</div>-->
<!--</div>-->
<div class="no_magrin">
<ul class="collapsible insideSetting">
<li id="RadarColor" class="hide">
<div class="collapsible-header row s12">
<div class="row s12 valign-wrapper pickercontain list">
<label for="radarColorPicker" class="col s4"> Metric color scale</label>
<div id = "radarColorPicker" class="colorscale-palette-container col s8">
<div class="colorscale-block">
</div>
</div>
<span style="position: absolute;margin: 0;margin-left: calc( 40% + 20px);font-size: 12px;color: #d8d8d8;">Click to change color scale</span>
</div>
</div>
<div class="collapsible-body">
<div class="row s12 valign-wrapper pickercontain">
</div>
</div>
</li>
<li id="ClusterColor" style="display: none">
<div class="collapsible-header">
<div class="row s12 valign-wrapper pickercontain list" style="width: 100%;">
<label for="radarColorPicker" class="col s4"> Cluster color scheme</label>
<div id="clusterColorPicker" class="colorscale-palette-container col s8">
<div class="colorscale-block">
</div>
</div>
</div>
</div>
<div class="collapsible-body">
<div class="row s12 valign-wrapper valign-wrapper pickercontain">
</div>
</div>
</li>
</ul>
</div>
<!--<label for="verticalDisplay" class="col s4">Vertical display: </label>-->
<!--<div class="row s12" id ="verticalDisplay" >-->
<!--<p class="switch col s8 valign-wrapper" style="margin-top:0;">-->
<!--<label>-->
<!--<span class="true">Off</span>-->
<!--<input type="checkbox" onchange="changeView(this)">-->
<!--<span class="lever"></span>-->
<!--<span class="false">On</span>-->
<!--</label>-->
<!--</p>-->
<!--</div>-->
</div>
</li>
<li>
<div class="collapsible-header capitalize" id=""><i class="fas fa-mouse" style="font-size: 1.4rem;"></i><span>Mouse Interaction</span> <i class="material-icons expand">chevron_right</i></div>
<div class="collapsible-body">
<div class="row s12 valign-wrapper">
<div class="col s12">
<label for="mouseAction" class="col s4">Mouse over</label>
<form id="mouseAction" class="col s7" style="padding-left: 0">
<label class="col left-align">
<input class="with-gap" name="mouseAction" type="radio" value="lensing" disabled="disabled"/>
<span>Lensing</span>
</label>
<label class="col left-align">
<input class="with-gap" name="mouseAction" type="radio" value="showseries" disabled="disabled"/>
<span>Show radar series </span>
</label>
<label class="col left-align">
<input class="with-gap" name="mouseAction" type="radio" value="showmetric" disabled="disabled"/>
<span>Show time series </span>
</label>
<label class="col left-align">
<input class="with-gap" name="mouseAction" type="radio" value="auto" checked />
<span>Compile mode</span>
</label>
<label class="col left-align">
<input class="with-gap" name="mouseAction" type="radio" value="disable" />
<span>Disable mouseover</span>
</label>
</form>
</div>
</div>
<div class="row s12 valign-wrapper">
<div class="col s12">
<label for="mouseClickAction" class="col s4">Mouse click</label>
<div id="mouseClickAction" class="col s7 left-align" style="padding-left: 0;"><p class="subText" style="margin: 0;">to freeze current selection.</p></div>
</div>
</div>
</div>
</li>
<li>
<div class="collapsible-header capitalize" id="vizController"><i class="icon-radarShape material-icons icon"></i><span>Radar Controller</span> <i class="material-icons expand">chevron_right</i></div>
<div class="collapsible-body">
<div class="row valign-wrapper">
<label for="viztype_holder" class="col s4">Circular layout</label>
<div id="viztype_holder" class="radio-toolbar col s8">
<label class="toolTip" data-title="Star chart">
<input name="viztype" type="radio" value="star"/>
<i class="icon-starShape material-icons"></i>
</label>
<label class="toolTip" data-title="Radar chart" >
<input name="viztype" type="radio" checked value="radar"/>
<i class="icon-radarShape material-icons"></i>
</label>
<label class="toolTip" data-title="Nightingale Rose Chart" >
<input name="viztype" type="radio" value="rose" />
<i class="icon-roseShape material-icons"></i>
</label>
<label class="toolTip" data-title="Flower chart" >
<input name="viztype" type="radio" value="flower"/>
<i class="icon-flowerShape material-icons"></i>
</label>
</div >
</div>
<div id="RadarController"></div>
<div id="RadarController_Table" style = "position:relative">
<table class="display" width="100%"></table>
</div>
<div id="RadarController_Table_toolbar">
<button type="submit" class ="menuBtn btn-small" id="enableVariableCorrelation"> Variable Correlation </button>
<button type="submit" value = false class ="menuBtn saveProfile modal-trigger btn-small" id="saveProfile" onclick="downloadProfile(this)" href="#savedialog_profile"><i class="fas fa-download"></i> Save</button>
<input id="profile_input_file" class="none" type="file" style="display: none;"/>
<button type="submit" value = false class ="menuBtn loadProfile btn-small" id="loadProfile" onclick="uploadProfile(this)"><i class="fas fa-upload"></i> Load </button>
</div>
</div>
</li>
<li class="active">
<div class="collapsible-header"><i class="material-icons">group_work</i> <span> Clusters </span><span class="col right-align valign-wrapper subText" style="font-size: 12px;">(by the 6 conditions)</span><i class="material-icons expand">chevron_right</i></div>
<div class="collapsible-body">
<div style="position: relative;">
<div id="clusterLoading" class="loading hidden">
<div class="progressDiv hidden">
<h6 class="progressText spinnerC center" style="top: calc(50% - 15px);" >saving data...</h6>
<div class="progress spinnerC center" style="width: 70%;">
<div class="determinate" style="width: 0%"></div>
</div>
</div>
</div>
<!--<div>-->
<!--<div class="row valign-wrapper">-->
<!--<label for="subject" class="col s4 radarcontroller_layout"> Category</label>-->
<!--<div id="subject" class="radio-toolbar col s8">-->
<!--<label class="toolTip" data-title="All">-->
<!--<input name="category" type="radio" checked="" value="all">-->
<!--<span class="material-icons">All</span>-->
<!--</label>-->
<!--<label class="toolTip" data-title="White type">-->
<!--<input name="category" type="radio" value="wt">-->
<!--<span class="material-icons">WT</span>-->
<!--</label>-->
<!--<label class="toolTip" data-title="STOP1">-->
<!--<input name="category" type="radio" value="stop1">-->
<!--<span class="material-icons">stop1</span>-->
<!--</label>-->
<!--</div>-->
<!--</div>-->
<!--</div>-->
<div>
<div class="row valign-wrapper">
<label for="clusterMethod" class="col s4 radarcontroller_layout"> Grouping Method</label>
<select id="clusterMethod" class="col s8 radarcontroller_layout">
<option value="leaderbin" selected="selected">Leader Bin</option>
<option value="kmean">K-means</option>
<option value="binarybin">Binary bin</option>
</select>
</div>
<div class="row valign-wrapper">
<label for="normMethod" class="col s4 radarcontroller_layout"> Distance Function</label>
<select id="normMethod" class="col s8 radarcontroller_layout">
<option value="l1">L1 norm - Manhattan Distance</option>
<option value="l2" selected="selected">L2 norm - Euclidean Distance</option>
</select>
</div>
<form action="#" class='clusterProfile row valign-wrapper' id = "leaderbinprofile" onsubmit="recalculateCluster( {clusterMethod: 'leaderbin',normMethod:$('#normMethod').val(),bin:{startBinGridSize: +$('#startBinGridSize').val(),range: [+$('#lowrange').val(),+$('#highrange').val()]}},onchangeCluster);return false;">
<label for="startBinGridSize" class="col s4 radarcontroller_layout hide">Initial diameter</label>
<div class="col s5 hide">
<input type="number" id="startBinGridSize" class="radarcontroller_layout browser-default">
</div>
<label for="lowrange" class="col s4 radarcontroller_layout">#Groups from </label>
<div class="col s5 no-pad-left valign-wrapper" >
<input type="number" id="lowrange" class="col s3 radarcontroller_layout browser-default no_leftmagrin">
<span class="col s2 no_leftmagrin">to</span>
<input type="number" id="highrange" class="col s3 radarcontroller_layout browser-default no_leftmagrin" >
</div>
<div class="col s3 no_padding valign-wrapper center-align" >
<button type="submit" class="btn-small animatIcon"><i class="material-icons">send</i><div>Submit</div></button>
</div>
</form>
<form action="#" class='clusterProfile hide row valign-wrapper' id = "kmeanprofile" onsubmit="recalculateCluster( {clusterMethod: 'kmean',normMethod:$('#normMethod').val(),bin:{k: +$('#knum').val(),iterations: +$('#kiteration').val()}},onchangeCluster);return false;">
<label for="knum" class="col s4 radarcontroller_layout">#Groups</label>
<div class="col s5 no-pad-left valign-wrapper">
<input type="number" id="knum" class="col s3 radarcontroller_layout browser-default no_leftmagrin">
<span class="col s6 no_leftmagrin"> #Iterations</span>
<input type="number" id="kiteration" class="col s3 radarcontroller_layout browser-default no_leftmagrin" >
</div>
<div class="col s3 no_padding valign-wrapper center-align" >
<button type="submit" class="btn-small animatIcon"><i class="material-icons">send</i><div>Submit</div></button>
</div>
</form>
<form action="#" class='clusterProfile hide row valign-wrapper' id = "binarybinprofile" onsubmit="recalculateCluster( {clusterMethod: 'binarybin',normMethod:$('#normMethod').val()},onchangeCluster);return false;">
<div class="col s3 no_padding valign-wrapper center-align" >
<button type="submit" class="btn-small animatIcon"><i class="material-icons">send</i><div>Submit</div></button>
</div>
</form>
</div>
<div class="row s12 valign-wrapper" style="margin-bottom: 0; padding-top: 10px; background-color: white">
<label class="col s8 offset-s4 left-align">
<input id="majorGroupDisplay_control" type="checkbox" class="filled-in">
<span >Display min-max</span>
</label>
</div>
<div class="row s12 flex_contain flex_warp white clusterDisplay" id="clusterDisplay">
</div>
<div class="divider"></div>
<div class="section">
<div class="row s12 valign-wrapper" style="margin-bottom: 0;">
<!--<label class="col s4" for="outlierDection">Outlier detection</label>-->
<label class="col s8 offset-s4 left-align">
<input id="outlierDection" type="checkbox" class="filled-in">
<span>Outlier detection</span>
</label>
</div>
</div>
<div class="row s12 flex_contain flex_warp white clusterDisplay" id="outlierDisplay">
</div>
<!--<div class="divider"></div>-->
<!--<!–<div class="row s12">–>-->
<!--<!–<label class="col s4">Group labels:</label>–>-->
<!--<!–<button type="submit" class ="menuBtn modal-trigger btn-small" href="#savedialog_description">–>-->
<!--<!–<i class="fas fa-download pauseicon" ></i> Save</button>–>-->
<!--<!–<button type="submit" class ="menuBtn btn-small" id="saveDescriptionbtn">–>-->
<!--<!–<i class="fas fa-upload pauseicon" ></i> Load</button>–>-->
<!--<!–<input id="description_input_file" class="none" type="file" style="display: none;"/>–>-->
<!--<!–</div>–>-->
<div class="row s12">
<label class="col s4">Group information:</label>
<button type="submit" class ="menuBtn modal-trigger btn-small" href="#savedialog_clusterInfo">
<i class="fas fa-download pauseicon" ></i> Save</button>
</div>
</div>
</div>
</li>
<li class="hide">
<div class="collapsible-header"><i class="material-icons expand">chevron_right</i> Developer Functions</div>
<div class="collapsible-body">
<button onclick="saveResults()" class ="menuBtn" style="background-color: #fff;"><i class="fas fa-download pauseicon"></i> Download current Data</button>
<button onclick="saveSVG_batch()" class ="menuBtn modal-trigger" style="background-color: #fff;" href="#savedialog">
<i class="fas fa-download pauseicon" ></i> Download Images</button>
</div>
</li>
<!--<li>-->
<!--<div class="collapsible-header"><i class="material-icons">help</i>Controls</div>-->
<!--<div class="collapsible-body"><strong>Zoom</strong>: Scroll mouse button to zoom.<br/></div>-->
<!--</li>-->
</ul>
</div>
</div>
<div id="instructions"></div>
<div id="Maincontent" class="row s12 no_magrin">
<a href="javascript:void(0)" class="closebtn btn-floating btn waves-effect waves-light" data-target="#mySidenav" data-source="#Maincontent" data-class="sideIn" data-link="#sideNavbtn" onclick="closeNav(this)"><i class="material-icons">chevron_left</i></a>
<div class="overlaySide">
<a class="openbtn btn-floating btn waves-effect waves-light pulse" data-target="#mySidenav" data-source="#Maincontent" data-class="sideIn" id="sideNavbtn" onclick="openNav(this)">
<i class="material-icons">chevron_right</i></a>
</div>
<div style="clear:both;"></div>
<div id="video" class= "container video-container mainContain" style="position: relative;">
<video id="videoIn" width="100%" controls>
<source src="https://onedrive.live.com/download?cid=E3E6F12DA30E0D56&resid=E3E6F12DA30E0D56%211586&authkey=AN7I8sE4yODj8fA" type="video/mp4">
Your browser does not support the video tag.
</video>
</div>
<div id="demo" style="position: relative;">
<div class="row s12 no_magrin" style="overflow-x: auto">
<div id ="scatterzone">
<div class="scatter_y activeY" id="data_onYaxis" ondrop="Scatterplot.drop(event)" ondragover="Scatterplot.allowDrop(event)"><span>Fan 1 Speed</span></div>
<div class="scatter_x activeX" id="data_onXaxis" ondrop="Scatterplot.drop(event)" ondragover="Scatterplot.allowDrop(event)"><span>CPU 1 Temp</span></div>
<div class="selection" id="selection">
<div id="selectionheader">Click & Drag</div>
</div>
</div>
<div id = "tsnezone">
<div id ="subzone" class="subpanel card-panel floatLeft">
<h6>Ranked by travel distant </h6>
<div class="top10DIV">
<svg class="top10" >
</svg>
</div>
<div class="details" ></div>
</div>
<div id ="subcontrolzone" class="controlHolderDiv">
<div class="controlDiv">
<div class="controlGroup">
<button value = false class ="menuBtn seperate"></button>
</div>
</div>
</div>
<div id ="userList" class="subpanel card-panel floatRight">
<div class = "row valign-wrapper" style="margin-bottom: 5px;">
<h6 class="valign-wrapper col" style="padding-left: 0;">User list<a id ="refeshUser" class="btn btn-small waves-effect waves-light white" onclick="getJoblist()"><i class="material-icons">autorenew</i></a></h6>
<div class="search-wrapper focused col empty">
<input type="text" id="search_User" placeholder="Search User...">
<!--<i class="material-icons">search</i>-->
</div>
</div>
<div class="top10DIV">
<table class = "collection empty">
<thead>
<tr>
<th>Username</th>
<th class="alignRight">#Jobs</th>
<th class="alignRight">#Hosts</th>
<th class="alignRight">Job
<p style="color: #ffa328;display: inline-block;margin: 0;">submitted</p> -
<p style="color: #3fc151;display: inline-block;margin: 0;">started</p>
<p id="userList_lastupdate" style="font-weight: normal;font-size: smaller;margin: 0;"></p>
</th>
</tr>
</thead>
<tbody>
</tbody>
</table>
<!--<svg class="top10" >-->
<!--</svg>-->
</div>
<div class="details" ></div>
</div>
</div>
<div class="row valign-wrapper hide">
<label class='col' for="sortorder"> SortBy: </label>
<div class="col">
<select id="sortorder" class="pulse_custom" style="display: block;height:unset">
<option value="label" >Input order</option>
<option value="maxValue">Max All Dimension</option>
<option value="similarity">Cluster Similarity</option>
<option value="pca">PCA</option>
<option value="pca2d">PCA 2D</option>
</select>
</div>
<button class="btn-floating play pause" value="pause" onclick="sortplay(this)"><i class="material-icons"></i></button>
<div class="col">
<label>
<input type="checkbox" class="filled-in" checked="checked" id="metricTable_control" onchange="((event)=>{graphicControl.tableEnable(event.checked)})(this)"/>
<span style="font: unset">Show metric tables</span>
</label>
</div>
<div class="col valign-wrapper" >
<label style="font: unset;" class='col'for="radarzoom">Radar size:</label>
<p class="range-field" >
<input type="range" id="radarzoom" value='300' min="50" max="600" />
</p>
<span id="radarzoomdisplay">300</span>
</div>
</div>
<div class="progress no_magrin hidden" id="load_render">
<div class="determinate" style="width: 10%"></div>
</div>
<!--<div class='row s12' id="timeline" style="position: relative;">-->
<!--<svg width="100%" height="50" class="timelinesvg" >-->
<!--</svg>-->
<!--</div>-->
<!--<div class='row s12' id="sumZone" style="position: relative;">-->
<!--<svg width="100%" height="500" class="sumsvg" >-->
<!--</svg>-->
<!--<!–<button id="job_zoom" class="lock float_left btn"><i class="material-icons left"></i></button>–>-->
<!--<!–<button id="job_zoom" class="lock float_left btn" onclick="zoomtoogle(this)">Pan/Zoom </button>–>-->
<!--</div>-->
<div id="myHnav" class="sideHnavs">
</div>
<a href="javascript:void(0)" class="closebtn horizontal btn-floating btn waves-effect waves-light hide" data-target=".sideHnavs" data-source="#Maincontent" data-class="sidehIn" data-link="#hNavbtn" onclick="closeNav(this)"><i class="material-icons">keyboard_arrow_down</i></a>
<div class='row s12 no_magrin' id="detailZone" style="position: relative;">
<svg class="mainsvg">
<svg id ="jobmap">
</svg>
</svg>
<div id="modelWorkerContent" class="hide" style="position:relative;background-color: white">
<div id="modelLoading" class="loading hidden">
<div class="progressDiv hidden">
<h6 class="progressText spinnerC center" style="top: calc(50% - 15px);" >saving data...</h6>
<div class="progress spinnerC center" style="width: 70%;">
<div class="determinate" style="width: 0%"></div>
</div>
</div>
</div>
<div class="overlaySide horizontal hide">
<a class="openbtn btn-floating btn waves-effect waves-light pulse" data-target=".sideHnavs" data-source="#Maincontent" data-class="sidehIn" data-link="#hNavbtn" id="hNavbtn" onclick="openNav(this)">
<i class="material-icons">keyboard_arrow_down</i></a>
</div>
<canvas id="modelWorkerScreen" width="100%" height="100vh"></canvas>
<!--<canvas id="modelWorkerScreen_fornt" style="position:absolute;top:0;left:0"></canvas>-->
<svg id="modelWorkerScreen_svg" style="position:absolute;top:0;left:0; pointer-events: none">
<defs>
<marker id="arrowhead" markerWidth="10" markerHeight="7"
refX="10" refY="3.5" orient="auto-start-reverse">
<polygon points="0 0, 10 3.5, 0 7" />
</marker>
</defs>
<g id="modelWorkerScreen_svg_g">
</g>
<g id="modelAxis" style="pointer-events: none">
</g>
<g id="modelWorkerScreen_lassotool">
</g>
<g id="modelNodeLabel">
</g>
<g id="modelClusterLabel">
</g>
</svg>
<div id="modelWorkerInformation" style="position:absolute;top:0px;right:0; width: 350px; z-index: 10; ">
<div id="modelSelectionInformation">
<div class="row empty search-wrapper focused no_magrin ">
<input type="text" id="search" class="search col s8" placeholder="Search host e.g AT1G34370">
<i class="material-icons col s1" style="margin: auto;">search</i>
</div>
<ul class="tabs" style="margin-top: 10px">
<li class="tab col s2"><a class="active" href="#modelSetting">Setting</a></li>
<li class="tab col s4"><a href="#modelSelectionTool">Group selection</a></li>
<!--<li class="tab col s3"><a href="#modelRanking">Ranking</a></li>-->
<li class="tab col s2"><a href="#modelVenn">Venn</a></li>
<li class="tab col s2"><a href="#modelNet">Net</a></li>
<li class="tab col s2"><a href="#modelFilter">Filter</a></li>
</ul>
<div id="modelSetting" class="tabHolder">
<table>
</table>
</div>
<div id="modelSelectionTool" class="tabHolder no-pad">
<span class="center-align row s12 emptyScreen">Drag and release to select data points</span>
<div class="valign-wrapper relativemap first" style="background: white; position: relative; width: 100%">
<svg class="svgHolder">
</svg>
<input class="clusterlabel browser-default truncate center-align col hide" type="text" value="8 metric(s) undefined" style=" position: absolute;transform: translate(0,-100%);">
<div class="actionHolder">
</div>
</div>
<button class="btn-small waves-effect waves-light valign-wrapper newGroup hide" style="width: 100%" type=submit>
<i class="material-icons left">add</i> New group from selection
</button>
<div class="confirm hide" style="margin-top: 15px;margin-bottom: 8px">
<div class="col s8 offset-s2">
<button type=submit class="btn-small invert animatIcon col ok s6"><i class="material-icons">check</i><div>OK</div></button>
<button type=submit class="btn-small animatIcon col cancel s6"><i class="material-icons">clear</i><div>CANCEL</div></button>
</div>
</div>
</div>
<div id="modelRanking" class="tabHolder hide">
<div class="row valign-wrapper">
<label for="modelSortBy" class="col s4">Sort by: </label>
<select id="modelSortBy" class="col s7 inline">
<option value="Distance Travel" selected>Average travel distance</option>
<option value="Change status">#Status changes</option>
</select>
</div>
<div class="row" id="modelRank">
<table>
<thead>
<td width="20%">Rank</td>
<td>Name</td>
<td>Score</td>
</thead>
<tbody>
</tbody>
</table>
</div>
</div>
<div id="modelVenn" class="tabHolder">
<div class="row valign-wrapper no_magrin">
<svg id="vennChart"></svg>
</div>
</div>
<div id="modelNet" class="tabHolder">
<div class="row valign-wrapper no_magrin" id="bubble">
</div>
<div class="row valign-wrapper no_magrin" id="protein">
</div>
</div>
<div id="modelFilter" class="tabHolder">
<div class="row valign-wrapper no_magrin">
<label for="modelFilterBy" class="col s4">Filter by: </label>
<select id="modelFilterBy" class="col s7 inline">
<option value="all" selected>All</option>
<!--<optgroup label="Category">-->
<option value="wt">Wild type</option>
<option value="stop1">STOP1</option>
<!--</optgroup>-->
<optgroup label="Changed">
<option value="groups">Cluster Changed</option>
<option value="umapDistance">UMAP Distance</option>
<option value="euclideanDistance">Euclidean Distance</option>
</optgroup>
<optgroup label="Experimental Mathematics" id="expFilter">
<!-- <option value="TF_DE">TF_DE</option>-->
<!-- <option value="TF_EXP">TF_EXP</option>-->
<!-- <option value="STOP1 follower">STOP1 target -Ecker Lab</option>-->
<!-- <option value="TARGETS|upregulated">TARGETS|upregulated -Jonathan</option>-->
<!-- <option value="TARGETS|downregulated">TARGETS|downregulated -Jonathan</option>-->
<!-- <option value="TARGETS|up|down">TARGETS|up|down-Jonathan</option>-->
</optgroup>
</select>
</div>
<div class="row valign-wrapper hide" id="samplingHolder">
<button id="modelSampling">Random display 500 radars</button>
</div>
<div class="row valign-wrapper hide" id="distanceFilterHolder">
<label for="modelDistanceFilter_holder" class="col s4">Distance Filter: </label>
<div id="modelDistanceFilter_holder" class="col s7 no-padding">
<svg id="modelDistanceFilter_projection_svg" class="hide modelDistanceFilter_svg" width="100%" height="30px" viewBox="0 0 20 10" preserveAspectRatio="none"></svg>
<svg id="modelDistanceFilter_euclidean_svg" class="hide modelDistanceFilter_svg" width="100%" height="30px" viewBox="0 0 20 10" preserveAspectRatio="none"></svg>
<div id="modelDistanceFilter"></div>
</div>
</div>
<div class="row no_magrin" style="max-height: 200px;overflow-y: auto;">
<div class="row s12 valign-wrapper">
<button type="submit" value = 0 class ="menuBtn btn-small filterLimit offset-s5 col" id="radarCollider" ><i class="icon-radarShape material-icons icon"></i> Collision detection</button>
</div>
<p id ="filterList" class="no_magrin">
</p>
<table id="filterTable" class="display stripe compact filterLimit" style="width:100%"></table>
<!--<button class="copybtn btn hide" style="margin: 10px;position: absolute;right: 0;bottom: 0;">Copy</button>-->
</div>
</div>
<div class="flex_col valign-wrapper radarCluster radarTimeSpace first" style="background: white">
<span class="selectionNum"></span>
<span class="target"></span>
<label class="col s8 offset-s4 left-align signleRadar">
<input id="modelCompareMode" type="checkbox" class="filled-in">
<span >Compare mode</span>
</label>
</div>
</div>
</div>
<!--<div id="modelSelectionInformation" class="hide" style="position:absolute;top:0;left:0">-->
<!--<div class="flex_col valign-wrapper radarCluster radarTimeSpace first" style="background: white">-->
<!--</div>-->
<!--</div>-->
<h5 class="title" style="position:absolute;top:0;left:50%"></h5>
</div>
<!--<button id="job_zoom" class="lock float_left btn"><i class="material-icons left"></i></button>-->
<!--<button id="job_zoom" class="lock float_left btn" onclick="zoomtoogle(this)">Pan/Zoom </button>-->
</div>
</div>
<svg style="position: absolute;z-index: 99; top:0;left:0;pointer-events: none">
<circle id="tipfollowscursorDiv" cx="0" cy="0"></circle>
</svg>
<div id="timelineTool" class="hide" style="position: absolute;right:0px;top:50px;padding:10px;">
<div style="position: relative">
<div>
<a class="toolTip btn" tooltip-pos="left" data-title="Zoom in" id="zoomIn">
<i class="material-icons">add</i>
</a>
</div>
<div class="row">
<a class="toolTip btn" tooltip-pos="left" data-title="Zoom out" id="zoomOut">
<i class="material-icons">remove</i>
</a>
</div>
<div class="row">
<a class="toolTip btn" tooltip-pos="left" data-title="Reset Screen" id="resetScreen">
<i class="material-icons">home</i>
</a>
</div>
</div>
</div>
</div>
</div>
<!--<div class="sumdrag card" ondrop="drop(event)" ondragover="allowDrop(event)">-->
<!--<button style="position:absolute;left: 0px;top: -20px;" id = 'dragChart'>Drag</button>-->
<!--<button style="position:absolute;right: 0;margin: 10px;" id = 'deselectChart'>Deselect Charts</button>-->
<!--<svg width="600" height="600" class="sumdragsvg" ></svg>-->
<!--</div>-->
<div id="savedialog" class="modal custom">
<div class="modal-content">
<div class="input-field col s6">
<input placeholder="radar chart" id="savename" type="text" class="validate">
<label for="savename">File name</label>
</div>
</div>
<div class="modal-footer">
<a href="#!" class="modal-close waves-effect waves-green btn-flat">Cancel</a>
<a href="#!" class="modal-close waves-effect waves-green btn-flat teal" onclick="onSaveImage()" style="color: rgba(255, 255, 255, 0.9);">Save</a>
</div>
</div>
<div id="savedialog_profile" class="modal custom">
<div class="modal-content">
<div class="input-field col s6">
<input placeholder="radar chart" id="savename_profile" type="text" class="validate">
<label for="savename_profile">File name</label>
</div>
</div>
<div class="modal-footer">
<a href="#!" class="modal-close waves-effect waves-green btn-flat">Cancel</a>
<a href="#!" class="modal-close waves-effect waves-green btn-flat teal" onclick="onSaveProfile()" style="color: rgba(255, 255, 255, 0.9);">Save</a>
</div>
</div>
<div id="savedialog_description" class="modal custom">
<div class="modal-content">
<div class="input-field col s6">
<input placeholder="label_cluster" id="savename_description" type="text" class="validate">
<label for="savename_profile">File name</label>
</div>
</div>
<div class="modal-footer">
<a href="#!" class="modal-close waves-effect waves-green btn-flat">Cancel</a>
<a href="#!" class="modal-close waves-effect waves-green btn-flat teal" onclick="onSaveDescription()" style="color: rgba(255, 255, 255, 0.9);">Save</a>
</div>
</div>
<div id="savedialog_clusterInfo" class="modal custom">
<div class="modal-content">
<div class="input-field col s6">
<input placeholder="label_cluster" id="savename_clusterInfo" type="text" class="validate">
<label for="savename_profile">File name</label>
</div>
</div>
<div class="modal-footer">
<a href="#!" class="modal-close waves-effect waves-green btn-flat">Cancel</a>
<a href="#!" class="modal-close waves-effect waves-green btn-flat teal" onclick="onSaveClusterInfo()" style="color: rgba(255, 255, 255, 0.9);">Save</a>
</div>
</div>
<div id="radar_Des_div" class="modal custom">
<!--<div id="radar_Des_div">-->
</div>
<div id="cluster_div" class="modal custom">\
</div>
<script type="x-shader/x-vertex" id="vertexshader">
attribute float alpha;
attribute float size;
attribute vec3 customColor;
attribute float texIndex;
varying float vAlpha;
varying vec3 vColor;
varying float vTexIndex;
void main() {
vAlpha = alpha;
vColor = customColor;
vTexIndex = texIndex;
vec4 mvPosition = modelViewMatrix * vec4( position, 1.0 );
gl_PointSize = size ;
gl_Position = projectionMatrix * mvPosition;
}
</script>
<script type="x-shader/x-fragment" id="fragmentshader">
uniform vec3 color;
uniform sampler2D textures[3];
varying float vAlpha;
varying vec3 vColor;
varying float vTexIndex;
void main() {
gl_FragColor = vec4( color * vColor, vAlpha );
if (vAlpha<0.001){