Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
Python 7
Repositories
- dynamic-foraging-task Public
Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
- harp.device.cuttlefish-fip Public Forked from AllenNeuralDynamics/harp.device.cuttlefish
an octal, TTL input/output device with programmable square wave output for fiber photometry.
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- aind-dynamic-foraging-basic-analysis Public
compute behavioral metrics and generate basic plottings for the dynamic foraging task
- aind-data-transfer-service Public
FastAPI service to run data compression and transfer jobs on the hpc
- metadata-chatbot Public
LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form
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