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Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 9 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 7

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 369 repositories
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 5 MIT 4 52 (1 issue needs help) 8 Updated Mar 28, 2025
  • aind-data-schema-models Public

    Data models used in aind-data-schema

    Python 0 MIT 3 10 2 Updated Mar 28, 2025
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 MIT 17 38 6 Updated Mar 28, 2025
  • harp.device.cuttlefish-fip Public Forked from AllenNeuralDynamics/harp.device.cuttlefish

    an octal, TTL input/output device with programmable square wave output for fiber photometry.

    C# 0 1 0 0 Updated Mar 28, 2025
  • aind-data-access-api Public

    Library to interface with AIND databases

    Python 2 MIT 0 10 1 Updated Mar 27, 2025
  • Python 0 MIT 0 0 0 Updated Mar 27, 2025
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    Python 0 MIT 2 29 4 Updated Mar 27, 2025
  • aind-dynamic-foraging-basic-analysis Public

    compute behavioral metrics and generate basic plottings for the dynamic foraging task

    Python 0 MIT 0 19 3 Updated Mar 28, 2025
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    Python 3 MIT 0 13 (1 issue needs help) 1 Updated Mar 27, 2025
  • metadata-chatbot Public

    LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form

    Python 2 MIT 0 10 0 Updated Mar 28, 2025