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Name		Name	Last commit message	Last commit date
parent directory ..
figures		figures
.DS_Store		.DS_Store
add_pmfs.Rd		add_pmfs.Rd
add_time_indexing.Rd		add_time_indexing.Rd
assert_cols_det_unique_row.Rd		assert_cols_det_unique_row.Rd
assert_daily_data.Rd		assert_daily_data.Rd
assert_dates_within_frame.Rd		assert_dates_within_frame.Rd
assert_df_not_empty.Rd		assert_df_not_empty.Rd
assert_elements_non_neg.Rd		assert_elements_non_neg.Rd
assert_equivalent_indexing.Rd		assert_equivalent_indexing.Rd
assert_int_or_char.Rd		assert_int_or_char.Rd
assert_no_dates_after_max.Rd		assert_no_dates_after_max.Rd
assert_no_repeated_elements.Rd		assert_no_repeated_elements.Rd
assert_non_missingness.Rd		assert_non_missingness.Rd
assert_req_count_cols_present.Rd		assert_req_count_cols_present.Rd
assert_req_ww_cols_present.Rd		assert_req_ww_cols_present.Rd
assert_rt_correct_length.Rd		assert_rt_correct_length.Rd
assert_single_value.Rd		assert_single_value.Rd
assert_site_lab_indices_align.Rd		assert_site_lab_indices_align.Rd
assert_sufficient_days_of_data.Rd		assert_sufficient_days_of_data.Rd
assert_ww_site_pops_lt_total.Rd		assert_ww_site_pops_lt_total.Rd
autoescape_brackets.Rd		autoescape_brackets.Rd
calc_rt.Rd		calc_rt.Rd
compile_model.Rd		compile_model.Rd
convert_to_logmean.Rd		convert_to_logmean.Rd
convert_to_logsd.Rd		convert_to_logsd.Rd
create_dir.Rd		create_dir.Rd
create_site_lab_map.Rd		create_site_lab_map.Rd
default_covid_gi.Rd		default_covid_gi.Rd
default_covid_inf_to_hosp.Rd		default_covid_inf_to_hosp.Rd
downsample_for_frequency.Rd		downsample_for_frequency.Rd
drop_first_and_renormalize.Rd		drop_first_and_renormalize.Rd
flag_ww_outliers.Rd		flag_ww_outliers.Rd
format_hosp_data.Rd		format_hosp_data.Rd
format_subpop_hosp_data.Rd		format_subpop_hosp_data.Rd
format_ww_data.Rd		format_ww_data.Rd
generate_simulated_data.Rd		generate_simulated_data.Rd
get_count_data_sizes.Rd		get_count_data_sizes.Rd
get_count_indices.Rd		get_count_indices.Rd
get_count_values.Rd		get_count_values.Rd
get_date_time_spine.Rd		get_date_time_spine.Rd
get_draws.Rd		get_draws.Rd
get_global_rt.Rd		get_global_rt.Rd
get_ind_m.Rd		get_ind_m.Rd
get_inits_for_one_chain.Rd		get_inits_for_one_chain.Rd
get_input_count_data_for_stan.Rd		get_input_count_data_for_stan.Rd
get_input_ww_data_for_stan.Rd		get_input_ww_data_for_stan.Rd
get_lab_site_site_spine.Rd		get_lab_site_site_spine.Rd
get_lab_site_subpop_spine.Rd		get_lab_site_subpop_spine.Rd
get_mcmc_options.Rd		get_mcmc_options.Rd
get_model_diagnostic_flags.Rd		get_model_diagnostic_flags.Rd
get_model_spec.Rd		get_model_spec.Rd
get_params.Rd		get_params.Rd
get_plot_forecasted_counts.Rd		get_plot_forecasted_counts.Rd
get_plot_global_rt.Rd		get_plot_global_rt.Rd
get_plot_subpop_rt.Rd		get_plot_subpop_rt.Rd
get_plot_ww_conc.Rd		get_plot_ww_conc.Rd
get_pred_obs_conc.Rd		get_pred_obs_conc.Rd
get_pred_subpop_gen_per_n.Rd		get_pred_subpop_gen_per_n.Rd
get_site_subpop_spine.Rd		get_site_subpop_spine.Rd
get_stan_data.Rd		get_stan_data.Rd
get_time_varying_daily_ihr.Rd		get_time_varying_daily_ihr.Rd
get_ww_data_sizes.Rd		get_ww_data_sizes.Rd
get_ww_indices_and_values.Rd		get_ww_indices_and_values.Rd
hosp_data.Rd		hosp_data.Rd
hosp_data_eval.Rd		hosp_data_eval.Rd
indicate_ww_exclusions.Rd		indicate_ww_exclusions.Rd
make_hospital_onset_delay_pmf.Rd		make_hospital_onset_delay_pmf.Rd
make_incubation_period_pmf.Rd		make_incubation_period_pmf.Rd
make_reporting_delay_pmf.Rd		make_reporting_delay_pmf.Rd
parameter_diagnostics.Rd		parameter_diagnostics.Rd
preprocess_count_data.Rd		preprocess_count_data.Rd
preprocess_ww_data.Rd		preprocess_ww_data.Rd
simulate_double_censored_pmf.Rd		simulate_double_censored_pmf.Rd
subpop_hosp_data.Rd		subpop_hosp_data.Rd
subpop_hosp_data_eval.Rd		subpop_hosp_data_eval.Rd
subpop_inf_process.Rd		subpop_inf_process.Rd
subpop_rt_process.Rd		subpop_rt_process.Rd
summary_diagnostics.Rd		summary_diagnostics.Rd
throw_type_error.Rd		throw_type_error.Rd
to_simplex.Rd		to_simplex.Rd
true_global_rt.Rd		true_global_rt.Rd
truncate_for_latency.Rd		truncate_for_latency.Rd
validate_count_data.Rd		validate_count_data.Rd
validate_data_jointly.Rd		validate_data_jointly.Rd
validate_paramlist.Rd		validate_paramlist.Rd
validate_pmf.Rd		validate_pmf.Rd
validate_ww_conc_data.Rd		validate_ww_conc_data.Rd
ww_data.Rd		ww_data.Rd
ww_data_eval.Rd		ww_data_eval.Rd
wwinference-package.Rd		wwinference-package.Rd
wwinference.Rd		wwinference.Rd
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