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@CMET-UGent

Center for microbial ecology and technology, Ghent University

CMET is specialized in the study and application of mixed microbial communities

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  1. Phenoflow_package Phenoflow_package Public

    Forked from rprops/Phenoflow_package

    R package offering functionality for the advanced analysis of microbial flow cytometry data

    HTML 5 2

  2. MicroRaman MicroRaman Public

    MicroRaman is an R package to process microbial Raman Spectroscopy data

    R 4 3

  3. CMETNGS CMETNGS Public

    Some convenience functions used in CMETs automated reporting pipeline for microbial amplicon sequencing

    R 2

  4. FCMvsRaman FCMvsRaman Public

    Characterizing phenotypic heterogeneity using flow cytometry and Raman spectroscopy

    Python 1

  5. HOB_Enrichment HOB_Enrichment Public

    Repository for data analyses scripts of Hu et al. (2019)

    R

  6. Raman_PhenoDiv Raman_PhenoDiv Public

    Raman spectroscopy-based measurements of single-cell phenotypic diversity in microbial communities

Repositories

Showing 10 of 14 repositories
  • Sakarika-Kerckhof-et-al-2023 Public

    Accompanying code to Sakarika, Kerckhof et al. 2023 - "Growth rate and limiting substrate define the nutritional composition and cell size of microbial biomass for food applications " (in prep)

    R 0 AGPL-3.0 0 0 0 Updated Dec 11, 2023
  • Garcia-Timermans_et_al_2023 Public

    Accompanying code to Garcia-Timermans et al 2023

    0 0 0 0 Updated May 25, 2023
  • Phenoflow_package Public Forked from rprops/Phenoflow_package

    R package offering functionality for the advanced analysis of microbial flow cytometry data

    HTML 5 GPL-2.0 5 0 0 Updated Jan 25, 2023
  • Kerckhof_Sakarika_et_al_2021 Public

    Accompanying code to Kerckhof & Sakarika 2021

    R 0 GPL-3.0 0 0 0 Updated Jan 12, 2023
  • Beterams-et-al.-2021 Public
    0 GPL-3.0 0 0 0 Updated Jun 9, 2021
  • Phylogeny_ElectroAutotrophs Public

    Underlying code for the bio-informatics of Prévoteau et al. (2020)

    R 0 GPL-3.0 0 0 0 Updated Mar 25, 2021
  • Dhaenens-et-al.-2021 Public

    R Code used in the manuscript: Characterization of the endometrial and vaginal microbiome in patients with repeated implantation failure and fertile women: a cross-sectional study.

    R 0 GPL-3.0 0 0 0 Updated Mar 4, 2021
  • CMETNGS Public

    Some convenience functions used in CMETs automated reporting pipeline for microbial amplicon sequencing

    R 2 GPL-3.0 0 0 0 Updated Dec 10, 2020
  • RamanMP Public

    Repository for data analysis García-Timermans et al (2020b)

    HTML 0 0 0 0 Updated Sep 28, 2020
  • MicroRaman Public

    MicroRaman is an R package to process microbial Raman Spectroscopy data

    R 4 GPL-3.0 3 7 0 Updated Jul 23, 2020
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