Files

img
software
- +cached
- @AnisoGaussianDetectionProcess
- @BioFormatsReader
- @Channel
- @DataProcessingProcess
- @DetectionProcess
- @ExternalDetectionProcess
- @FigDisplay
- @HCSReader
- @HistogramDisplay
- @ImFolder
- @ImageAnalysisProcess
- @ImageData
- @ImageDisplay
- @ImageOverlayDisplay
- @ImageProcessingProcess
- @LineDisplay
- @MaskIntersectionProcess
- @MaskProcess
- @MaskProcessingProcess
- @MotionAnalysisProcess
- @MovieData
- @MovieDataDisplay
- @MovieList
- @MovieObject
- @NonSingularProcess
- @NucleiDetectionProcess
- @NucleiTrackingPackage
- @OmeroReader
- @Package
- @PointSourceDetectionProcess
- @PointSourceDetectionProcess3D
- @PostTrackingProcess
- @Process
- @Reader
- @SubResolutionProcess
- @TextDisplay
- @TiffImagesReader
- @TiffSeriesReader
- @TrackingPackage
- @TrackingProcess
- @Tracks
- @TracksDisplay
- @TracksHandle
- @TracksStruct
- @UTrackPackage
- @UTrackPackage3D
- bioformats
- doc
- extern
- icons
- mex
- Animation.m
- CachedProjectDynROIProcess.m
- CachedSequence.m
- CachedSequenceCellCache.m
- CometDetectionProcess.m
- CometPostTrackingProcess.m
- ComputeMIPProcess.m
- DASC_instruction.pdf
- DASCtest.m
- Detections.m
- DynROI.m
- FrameOfRef.m
- GaussFitND.m
- GaussFitND_gradient.m
- GaussListND.m
- HCSplatestack.m
- HandleObject.m
- ImAnimation.m
- MTTracksDisplay.m
- MakeQTMovie.m
- PDF_BootCI_balanced.m
- PlusTipTrackerPackage.m
- PlusTipTrackerPackage3D.m
- PointSourceDetectionProcess3DDynROI.m
- ProjAnimation.m
- ProjectDynROIProcess.m
- ProjectDynROIRendering.m
- SEM_calc.m
- TrackingDynROIProcess.m
- TracksROI.m
- abstractProcessGUI.fig
- abstractProcessGUI.m
- addMovieViewerKeyboardShortcuts.m
- addROIGUI.fig
- addROIGUI.m
- adtest1.m
- all_insequence.m
- analyzeBleaching.m
- analyzeMovieMotion.m
- anisoGaussian2DSupport.m
- anisoGaussianDetectionProcessGUI.fig
- anisoGaussianDetectionProcessGUI.m
- asymDeterm2D3D.m
- balancedPooling.m
- barplot2.m
- bfGetMemoDirectory.m
- bfGetMemoizer.m
- bfImport.m
- binarySegmentLengths.m
- blobSegmentThreshold.m
- boxplot2.m
- calcTrackMoments.m
- catStruct.m
- ccpSorter.m
- centroid2D.m
- centroid3D.m
- centroidSubResFeatures2D.m
- channelGUI.fig
- channelGUI.m
- checkallChannels_Callback.m
- chooseTracks.m
- cliGUI.m
- cmeAnalysis.m
- cmeAnalysis_DTonly.m
- colocalizationLAP.m
- combineGroupListFiles.m
- cometDetection.m
- cometDetectionProcessGUI.fig
- cometDetectionProcessGUI.m
- cometPostTrackingProcessGUI.fig
- cometPostTrackingProcessGUI.m
- computeMIPs.m
- computeMovieMIP.m
- convStruct2MatIgnoreMS.m
- convStruct2MatNoMS.m
- convertMat2Struct2.m
- convnfft.m
- coordAmpMatFromIndicesSparse.m
- costMatLinearMotionCloseGaps2.m
- costMatLinearMotionLink2.m
- costMatRandomDirectedSwitchingMotionCloseGaps.m
- costMatRandomDirectedSwitchingMotionCloseGapsGUI.fig
- costMatRandomDirectedSwitchingMotionCloseGapsGUI.m
- costMatRandomDirectedSwitchingMotionLink.m
- costMatRandomDirectedSwitchingMotionLinkGUI.fig
- costMatRandomDirectedSwitchingMotionLinkGUI.m
- costMat_OpeningFcn.m
- createSparseDistanceMatrix.m
- cropMovie.m
- cropMovieGUI.fig
- cropMovieGUI.m
- cropStack.m
- cutFirstHistMode.m
- cutTrack.m
- dasAnalysis.m
- dasCluster.m
- dasClusterPlot_single.m
- dasClusterPlot_single_contour.m
- dasCohorts.m
- dasComputeD.m
- dasComputeDas.m
- dasDataProcess.m
- dasEpiTIRF.m
- dasFigure1.m
- dasFigure1_3D.m
- dasMuiltiCondition.m
- dasParameter.m
- dasPdfConf.m
- dasPlotBar.m
- dasPlotCondition.m
- dasPoolingBootstrap.m
- dasRead.m
- dasReadChild.m
- dasSavePlot.m
- dasSingleCondition.m
- dasStat.m
- dataPreparationGUI.fig
- dataPreparationGUI.m
- deleteChannel_Callback.m
- densityplot.m
- detectComets.m
- detectComets3D.m
- detectEDFOutliers.m
- detectMovieAnisoGaussians.m
- detectMovieComets.m
- detectMovieNuclei.m
- detectMoviePointSources.m
- detectMoviePointSources3D.m
- detectMovieSubResFeatures.m
- detectNuclei.m
- detectSubResFeatures2D_StandAlone.m
- detectSubResFeatures2D_V2.m
- detectionBinaryOverlay.m
- discriminationMatrix.m
- distnObj_plotPDFs_BootCI.m
- distribTest.m
- epiTIRFAnalysis.m
- estimTrackTypeParamLM2.m
- estimTrackTypeParamRDS.m
- extendedColors.m
- externalDetectionProcessGUI.fig
- externalDetectionProcessGUI.m
- fastBlobFinder.m
- fillTrackGaps.m
- filterGauss1D.m
- filterGauss2D.m
- filterGauss3D.m
- filterGaussianFit2D.m
- filterLoG.m
- filterLoGND.m
- findOverlapPSFs2D.m
- findTrackGaps.m
- fitExpToHist.m
- fitGaussianMixtures2D.m
- fitGaussianMixtures3D.m
- fitGaussianModeToPDF.m
- fitGaussians2D.m
- fitGaussians3D.m
- fitNGaussians2D.m
- fitNGaussians2DVarSigma.m
- formatPath.m
- formatTickLabels.m
- fsFigure.m
- generateReport.m
- getAveDispEllipseAll2.m
- getCellDir.m
- getCellMask.m
- getDirFromPath.m
- getExpDir.m
- getFeatFromIdx.m
- getFileStackNames.m
- getFilenameBody.m
- getFilesep.m
- getFluorPropStruct.m
- getFluorophoreHues.m
- getGaussianPSFsigma.m
- getGaussianPSFsigmaFrom3DData.m
- getGaussianPSFsigmaFromData.m
- getIntensityCohorts.m
- getLCCBCopyright.m
- getLCCBOmeroNamespace.m
- getLensProperties.m
- getLifetimeData.m
- getLifetimeHistogram.m
- getMovieName.m
- getMultiplicity.m
- getNumSegmentsPerTrack.m
- getOmeroLists.m
- getOmeroMovies.m
- getPSNRDistribution.m
- getParentDir.m
- getRelocationDirs.m
- getSearchRegionRDS.m
- getShortPath.m
- getTrackSEL.m
- getTrackType.m
- getVisitorIndex.m
- getindexstart.m
- graphBinaryOverlay.m
- graphViewer.m
- icon_ButtonDownFcn.m
- imDir.m
- imFolderGUI.fig
- imFolderGUI.m
- imageDataGUI.fig
- imageDataGUI.m
- imageDataViewer.m
- importExternalDetectData.m
- importExternalDetection.m
- imseriesmaskshowrgb.m
- imseriesshow.m
- inputImDPackageList.m
- inputMLPackageList.m
- inputParserRetrofit.m
- insequence.m
- insequence_and_scalar.m
- intersectMovieMasks.m
- isConcreteClass.m
- isProcessOrMovieData.m
- isProcessOrMovieObject.m
- isSubclass.m
- isposint.m
- isvalid.m
- joinColumns.m
- kalmanGainLinearMotion.m
- kalmanInitLinearMotion.m
- kalmanInitializationGUI.fig
- kalmanInitializationGUI.m
- kalmanResMemLM.m
- kalmanReverseLinearMotion.m
- label2rgbND.m
- labelToMovieInfo.m
- lap.m
- lineWithGaps.m
- linkFeaturesKalmanSparse.m
- listSelectGUI.fig
- listSelectGUI.m
- loadConditionData.m
- loadFigureSettings.m
- loadLCCBIcons.m
- loadTrackSettings.m
- loadTracks.m
- locmax1d.m
- locmax2d.m
- locmax3d.m
- locmin1d.m
- manualSegmentationTweakGUI.m
- markedWatershed.m
- maskFromFirstMode.m
- mkClrDir.m
- mkdirRobust.m
- mmfDistPV.m
- mmfInitGuessLowerUpperBounds.m
- mockMovieData.m
- motionAnalysisProcessGUI.fig
- motionAnalysisProcessGUI.m
- movieDataGUI.fig
- movieDataGUI.m
- movieSelectorGUI.fig
- movieSelectorGUI.m
- movieViewer.m
- movieViewerOptions.m
- msgboxGUI.fig
- msgboxGUI.m
- multiscaleStochasticFiltering.m
- naFromLensID.m
- name2wavelength.m
- newDiffTypeThreshold.mat
- newDiffTypeThreshold1D.mat
- noSettingsProcessGUI.fig
- noSettingsProcessGUI.m
- normList.m
- notBoxPlot.m
- nucleiDetectionProcessGUI.fig
- nucleiDetectionProcessGUI.m
- omeroCacheImport.m
- omeroDataSelectionGUI.fig
- omeroDataSelectionGUI.m
- omeroImport.m
- omeroLoginGUI.fig
- omeroLoginGUI.m
- omeroSave.m
- optimalHistogram.m
- overlayProjDetectionMovie.m
- overlayProjDetections.m
- overlayProjGraph.m
- overlayProjTrackGapMovie.m
- overlayProjTracks.m
- overlayProjTracksMovie.m
- packageGUI.fig
- packageGUI.m
- packageGUI_OpeningFcn.m
- packageGUI_RefreshFcn.m
- packageGUI_RunFcn.m
- padarrayXT.m
- parseProcessParams.m
- pcombs.m
- permKSTestMeanEDF.m
- permTest.m
- perpVector.m
- pixPerFrame2umPerMin.m
- plotCellArea.m
- plotExampleTrack.m
- plotInitiationDensity.m
- plotIntensityCohorts.m
- plotIntensityDistributions.m
- plotLifetimeComparison.m
- plotLifetimes.m
- plotMaxIntensityDistribution.m
- plotPDFconf.m
- plotPSNRDistribution.m
- plotScaleBar.m
- plotTimeStamp.m
- plotTrack.m
- plotTracks2D.m
- plotTracks3D.m
- plotTracksDiffAnalysis2D.m
- plusTipBreakNonlinearTracks.m
- plusTipCostMatCloseGaps.m
- plusTipCostMatCloseGapsGUI.fig
- plusTipCostMatCloseGapsGUI.m
- plusTipCostMatLinearMotionLink.m
- plusTipCostMatLinearMotionLinkGUI.fig
- plusTipCostMatLinearMotionLinkGUI.m
- plusTipDynamParam.m
- plusTipExtractGroupData.m
- plusTipGetHits.m
- plusTipGetSubtrackCoords.m
- plusTipGetVelocitiesFromMat.m
- plusTipGroupAnalysisGUI.fig
- plusTipGroupAnalysisGUI.m
- plusTipKalmanGainLinearMotion.m
- plusTipKalmanInitLinearMotion.m
- plusTipMakeBoxplots.m
- plusTipMakeHistograms.m
- plusTipMergeSubtracks.m
- plusTipPerCellPlot.m
- plusTipPoolGroupData.m
- plusTipRemBegEnd.m
- plusTipTestDistrib.m
- plusTipTrackerPackageGUI.m
- plusTipWithinGroupComparison.m
- pointSourceDetection.m
- pointSourceDetection3D.m
- pointSourceDetectionProcessGUI.fig
- pointSourceDetectionProcessGUI.m
- pointSourceDetectionProcessGUI3D.fig
- pointSourceDetectionProcessGUI3D.m
- pointSourceStochasticFiltering.m
- poolExperiments.m
- postProcessMTTracks.m
- postProcessMovieComets.m
- prepPerChannelParams.m
- processGUI_ApplyFcn.m
- processGUI_OpeningFcn.m
- progressText.m
- projMontage.m
- projectCoordOntoDir.m
- randSampling.m
- randomColormap.m
- readIXMHTDFileM.m
- readtiff.m
- recursiveDir.m
- recycleProcessGUI.fig
- recycleProcessGUI.m
- relocatePath.m
- robustMean.m
- rotateXTickLabels.m
- roundOddOrEven.m
- runDetection.m
- runLifetimeAnalysis.m
- runProcesses.m
- runSlaveChannelClassification.m
- runTrackProcessing.m
- runTracking.m
- scaleContrast.m
- scaleEDFs.m
- scattercontour.m
- scriptCorrectImageDrift.m
- sec2struct.m
- selectChannel_Callback.m
- selectConditionData.m
- setErrorbarStyle.m
- setupFigure.m
- shadedErrorBarV2.m
- sigstar.m
- simulatedPredictionVoting.m
- sortStringsByToken.m
- sortTiffStacks.m
- spatialMovAveBG.m
- splitPerChannelParams.m
- sprintfPath.m
- stackRead.m
- stackWrite.m
- stairsXT.m
- stamp3d.m
- subResolutionProcessGUI.fig
- subResolutionProcessGUI.m
- summarizeDiffAnRes.m
- swapMaskValues.m
- testCMEanalysis.m
- thresholdFluorescenceImage.m
- thresholdFluorescenceImageFewBg.m
- thresholdOtsu.m
- thresholdRosin.m
- tif3Dread.m
- timeColormap.m
- trackBinaryOverlay.m
- trackCloseGapsKalmanSparse.m
- trackDiffusionAnalysis1.m
- trackMSSAnalysis.m
- trackMovie.m
- trackingProcessGUI.fig
- trackingProcessGUI.m
- uTrackPackageGUI.m
- uTrackParCluster.m
- u_quantify.m
- userfcn_checkAllMovies.m
- userfcn_drawIcon.m
- userfcn_enable.m
- userfcn_lampSwitch.m
- userfcn_saveCheckbox.m
- vennplot.m
- wavelength2rgb.m
- weightedStats.m
- whichMatFile.m
CMEAnalysisPackageManual.pdf
GPL-License.txt
README.md

abstractProcessGUI.fig

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