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@DeepMicroscopy

DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy

This is our central home for all our digital pathology projects, focusing on deep learning.

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  1. SlideRunner SlideRunner Public

    SlideRunner is a tool for massive cell annotations in whole slide images

    Python 77 10

  2. Exact Exact Public

    An open source online platform for collaborative image labeling of almost everything

    JavaScript 56 18

  3. MITOS_WSI_CCMCT MITOS_WSI_CCMCT Public

    Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 28 10

  4. MITOS_WSI_CMC MITOS_WSI_CMC Public

    Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 20 9

  5. MIDOG MIDOG Public

    MItosis DOmain Generalization Challenge 2021/2022

    Python 15 5

  6. MIDOGpp MIDOGpp Public

    A large, multi-domain mitotic Figure Dataset

    Python 13 9

Repositories

Showing 10 of 39 repositories
  • Exact Public

    An open source online platform for collaborative image labeling of almost everything

    JavaScript 56 MIT 18 11 0 Updated Mar 23, 2025
  • WsiRegistration Public Forked from ChristianMarzahl/WsiRegistration

    Robust quad-tree based registration on whole slide images (Marzahl et al.)

    Python 0 MIT 6 0 0 Updated Mar 21, 2025
  • AMi-Br Public

    AMI-Br: A Dataset of Typical and Atypical Mitotic Figures on Human Breast Cancer

    Jupyter Notebook 4 0 0 0 Updated Mar 13, 2025
  • HDV Public
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Mar 5, 2025
  • TriCon-GI Public

    Code for the paper 'Triple-Conditioned Generative Inpainting for Improved Atypical vs. Normal Mitosis Classification'

    Jupyter Notebook 0 1 0 0 Updated Feb 27, 2025
  • CanineCutaneousTumors Public
    Jupyter Notebook 9 1 0 0 Updated Jan 9, 2025
  • MIDOGpp Public

    A large, multi-domain mitotic Figure Dataset

    Python 13 MIT 9 1 1 Updated Jan 4, 2025
  • FELIX Public

    Felinae Evaluation with Layperson and ML Interaction EXperience Dataset (FELIX)

    Jupyter Notebook 0 CC-BY-SA-4.0 0 0 0 Updated Nov 12, 2024
  • TCGA-BRCA-TumorArea-Coarse Public

    Coarse annotations of tumor areas from the TCGA-BRCA dataset

    Python 0 0 0 0 Updated Nov 7, 2024
  • TUPAC16_AlternativeLabels Public

    Alternative training set for the TUPAC16 auxiliary mitotic figure data set

    Jupyter Notebook 12 4 0 0 Updated Oct 22, 2024
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