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Ben Lengerich
authoredMar 13, 2017
Update README.md
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‎README.md

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This is a curated list of computational biology datasets that have been pre-processed for machine learning.
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This list is a work in progress, please submit a pull request for any dataset you would like to advertise!
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## Sequencing
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## Genotyping
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|Name | Description | Link | Comments |
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|The Cancer Genome Atlas| Variety of Cancer Data, most typles have 100-1000 samples | https://cancergenome.nih.gov/ | |
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|Cytometry Continuous | flow cytometry data of 11 proteins+phospholipids, Discretized and cleaned data available offline | http://science.sciencemag.org/content/308/5721/523.figures-only http://science.sciencemag.org/content/308/5721/523 | Classical benchmark dataset for learning graphical models; contains known errors |
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| Transcription factor binding | ChIP-Seq data on 12 TFs | http://www.pnas.org/content/106/51/21521.abstract?tab=ds https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2789751/ | |
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| GTEx | Landmark study for EQTL analysis | http://www.gtexportal.org/home/ | |
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|PharmacoGenomics DB | | https://www.pharmgkb.org/ | |
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## Regulatory Networks

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