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nf-core-crispriscreen
nf-core-crispriscreen PublicProcess next generation sequencing data obtained from CRISPRi repression library screenings
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snakemake-ms-proteomics
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snakemake-crispr-guides
snakemake-crispr-guides PublicA Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
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snakemake-ont-bacterial-variants
snakemake-ont-bacterial-variants PublicA Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
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RNA_editing_analysis_pipeline
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snakemake-bacterial-riboseq
snakemake-bacterial-riboseq PublicBacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
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Repositories
- ignatov_et_al_2025 Public
R scripts and source data to reproduce the primary results presented in the manuscript: Ignatov et al. (2024).
- snakemake-workflow-template Public template Forked from snakemake-workflows/snakemake-workflow-template
A template for standard compliant snakemake-workflows
- snakemake-bacterial-riboseq Public
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
- snakemake-ms-proteomics Public
Pipeline for automatic processing and quality control of mass spectrometry data
- snakemake-ont-bacterial-variants Public
A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
- snakemake-crispr-guides Public
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
- nf-core-crispriscreen Public
Process next generation sequencing data obtained from CRISPRi repression library screenings
- lautenschlaeger_silent_sites Public
Code for identifying silent sites in NGS RNA data with cross strain comparison
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