Python Source Code

Information about each script

Generate_Seq.py: generates simulated DNA sequences with domains of homogeneous GC Content. Simulated Sequences can either have equal-length domains or variable-length domains.
Testing_Library.py:
ViewGC.py: Shows a graph of window-based GC content using the FASTA sequence and JSON sequence data files inputted.
score_eqlengths.py: Compiles data for correlational analysis between ground truth domain length for EQUAL-LENGTH SEQUENCES and average predicted length by both isoPlotter and isoSegmenter.
score_varlengths.py:Compiles data for correlational analysis between ground truth number of domains for VARIABLE-LENGTH SEQUENCES and average predictions by both isoPlotter and isoSegmenter.
score_isoplotter.py: Scores all predictions made by isoPlotter (equal length and variable length) and outputs summary data
score_isosegmenter.py: Scores all predictions made by isoSegmenter (equal length and variable length) and outputs summary data