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@Xinglab

Xinglab

Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia and University of Pennsylvania

Popular repositories Loading

  1. rmats-turbo rmats-turbo Public

    C++ 246 54

  2. rmats2sashimiplot rmats2sashimiplot Public

    Python 142 56

  3. DARTS DARTS Public

    Deep-learning Augmented RNA-seq analysis of Transcript Splicing

    Python 111 32

  4. espresso espresso Public

    Python 60 4

  5. lr2rmats lr2rmats Public

    Long read to rMATS

    C 31 6

  6. CLAM CLAM Public

    CLIP-seq Analysis of Multi-mapped reads

    Python 29 6

Repositories

Showing 10 of 35 repositories
  • STRIPE Public
    R 0 0 0 0 Updated Mar 21, 2025
  • scCirRL-seq Public

    Haplotype-resolved full-length transcriptome analysis in single cells by scCirRL-seq

    Python 0 MIT 0 0 0 Updated Mar 5, 2025
  • rmats-turbo-tutorial Public
    HTML 3 4 0 0 Updated Feb 20, 2025
  • TEQUILA-seq Public

    The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.

    Python 8 0 1 0 Updated Feb 12, 2025
  • rmats2sashimiplot Public
    Python 142 GPL-2.0 56 32 0 Updated Jan 30, 2025
  • rMATS-long Public
    Python 28 2 4 0 Updated Dec 10, 2024
  • iDARTS Public

    Predicting splicing effects of human genome variants from sequences

    Python 1 0 0 0 Updated Nov 20, 2024
  • rmats-turbo Public
    C++ 246 54 210 2 Updated Nov 19, 2024
  • ProteoSeq Public

    ProteoSeq: A proteogenomics workflow leveraging long-read RNA-seq data for discovery of isoform-level peptides and proteins.

    Python 0 0 0 0 Updated Nov 18, 2024
  • IRIS Public

    IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

    Python 24 10 10 0 Updated Aug 20, 2024
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