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@fish-quant

FISH-quant

Analysis of smFISH images.

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  1. rna2seg Public

    rna2seg

    Python 11 1

  2. ComSeg Public

    comseg

    Python 19 3

  3. big-fish Public

    Toolbox for the analysis of smFISH images.

    Python 59 19

Repositories

Showing 10 of 13 repositories
  • rna2seg Public

    rna2seg

    Python 11 MIT 1 1 0 Updated Mar 17, 2025
  • pipelines_apiFISH Public
    0 0 0 0 Updated Feb 27, 2025
  • ComSeg Public

    comseg

    Python 19 MIT 3 4 0 Updated Feb 6, 2025
  • autofish Public

    Python code to control automated iterative FISH system

    Python 4 MIT 0 7 0 Updated Jan 22, 2025
  • autofish-analysis Public
    Jupyter Notebook 1 MIT 0 0 0 Updated Nov 7, 2024
  • tutorial_gene_selection Public
    Jupyter Notebook 0 0 0 0 Updated Feb 28, 2024
  • big-fish Public

    Toolbox for the analysis of smFISH images.

    Python 59 BSD-3-Clause 19 16 2 Updated Oct 31, 2023
  • fq-segmentation Public

    Wrapper code for segmentation of cells and nuclei with Cellpose.

    Python 2 BSD-3-Clause 2 2 1 Updated Jul 19, 2023
  • fq-imjoy Public

    ImJoy plugins to run different smFISH analysis in a user-friendly setting.

    HTML 2 MIT 2 16 0 Updated Mar 8, 2023
  • sim-fish Public

    Toolbox to simulate smFISH images.

    Python 7 BSD-3-Clause 1 1 0 Updated Sep 5, 2022
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