Skip to content

Issues: kblin/ncbi-genome-download

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
45 Open 101 Closed
45 Open 101 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

The script is not at all a necessary tool not a bug wontfix
#85 by STRHunter was closed Mar 11, 2019
2 👎 7
DEBUG: Skipping over unexpected checksum line u'' bug
#18 by tseemann was closed Nov 11, 2016
@kblin
2
Can I also use this to download specific genus?
#3 by dutchscientist was closed May 17, 2016
@kblin
4
Ability to download specific species enhancement
#5 by tseemann was closed Sep 8, 2016
@kblin
4
Parallel download for us with crappy FTP connections enhancement
#6 by tseemann was closed May 27, 2016
@kblin
2
Use batch rsync instead of FTP enhancement
#7 by tseemann was closed Aug 25, 2016
@kblin
3
Human readable files/folders as Genus_species_strain enhancement
#8 by tseemann was closed Sep 9, 2016
@kblin
6
Add "chromosome" as an assembly level enhancement
#9 by kblin was closed May 19, 2016
@kblin
Download the correct FASTA file bug
#10 by kblin was closed Jun 1, 2016
@kblin
1
Python version requirement not listed
#11 by tomck was closed Jun 17, 2016
2
Improve handling of network outages during transfer
#12 by tomck was closed Sep 8, 2016
10
Complete genomes can be 'complete' or 'chromosome' enhancement help wanted
#14 by tseemann was closed Mar 9, 2018
7
Allow creation of --human-readable hierarchy if files are already downloaded enhancement
#16 by kblin was closed Jan 12, 2017
3
Handle non-ASCII characters
#1 by kblin was closed May 6, 2016
1
viral division has disappeared from NCBI
#19 by tseemann was closed Oct 28, 2016
13
OSError: [Errno 17] File exists bug
#20 by tseemann was closed Feb 8, 2017 0.2.3 release
@kblin
12
FYI - NCBI doing "Genus species" folders now? question
#21 by tseemann was closed Dec 1, 2016
3
requests 2.4.3 is required bug
#23 by alartin was closed Nov 11, 2016
3
return entry['organism_name'].split(' ')[1] IndexError: list index out of range bug
#24 by tseemann was closed Feb 8, 2017 0.2.3 release
@kblin
5
starts, then fail bug
#29 by phiweger was closed Jul 9, 2019 0.2.3 release
@kblin
26
Using ncbi-genome-download package
#231 by ChillarAnand was closed Aug 5, 2024
4
Is it possible to use this script for higher taxon-levels than "Genus"? question
#32 by jvollme was closed Mar 29, 2017
4
Bump to 0.2.4 question
#34 by mbourqui was closed Mar 2, 2017
2
Support for proxies in requests
#35 by mbourqui was closed Mar 9, 2018
3
Fix the setup.py/requirements.txt magic to only install pyOpenSSL on old Python versions enhancement help wanted
#17 by kblin was closed Dec 1, 2016
2
ProTip! What’s not been updated in a month: updated:<2025-02-19.