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qupath/qupath-docs
Scripting in IDE

Currently the docs custom scripting page links to a rather out of date Wiki page. May be useful to add a separate page to the docs explaining the current set up with IDE (intelliJ and VSCode?) in addition ...
  • finglis
  • 2
  • Opened 
    on Jan 8
  • #130

qupath/qupath-docs
Remove broken link to ImmunoRatio

In the ImageJ section: https://github.com/qupath/qupath-docs/blob/1e5d976ca238ec3c51348002abe71c0e01e454db/docs/advanced/imagej.md?plain=1#L161 (It is probably no longer a very relevant example of an ...
  • petebankhead
  • Opened 
    on Oct 11, 2024
  • #123

qupath/qupath-docs
Incorrect Link to DJL documentation

This section: https://qupath.readthedocs.io/en/0.5/docs/deep/gpu.html#creating-a-launcher-for-qupath-pytorch This line: There are some extra PyTorch options with DJL. There are more details in the DJL ...
  • saramcardle
  • 1
  • Opened 
    on Sep 23, 2024
  • #120

qupath/qupath-docs
typo in GPU support docs

The name of the environment switches between pytorch-qupath and qupath-pytorch here: https://github.com/qupath/qupath-docs/blob/0.5/docs/deep/gpu.md#creating-an-environment-for-pytorch
  • saramcardle
  • Opened 
    on Sep 20, 2024
  • #117

qupath/qupath-docs
Link to images in acknowledgement thumbnails?

I hadn t realised until this forum post but our use of thumbnails on the forum is pretty confusing, and we should really try to make it less so. (Thanks @melissalinkert!)
  • petebankhead
  • 3
  • Opened 
    on Aug 29, 2024
  • #116

qupath/qupath-docs
Typo in documentation

https://github.com/qupath/qupath-docs/blob/a7af49ab056bf3973c9e5c8419617ed9b7d7d030/docs/tutorials/density_maps.md?plain=1#L199 should say highest not mighest
  • saramcardle
  • 1
  • Opened 
    on Jun 12, 2024
  • #112

qupath/qupath-docs
Sample scripts out of date for v0.5.0

See https://www.youtube.com/watch?v=Ou5qqHK5NV8 Specifically the Dialogs class has moved!
  • petebankhead
  • 3
  • Opened 
    on Mar 27, 2024
  • #105

qupath/qupath-docs
Fix v0.4 references in WSInfer docs

e.g. see https://github.com/qupath/qupath-docs/blob/132a842ca3e6c47c10ec60bc47be4b0d14a11049/docs/deep/wsinfer.md?plain=1#L13-L18 Should update for v0.5, with benchmarks as described at - https://github.com/qupath/qupath-docs/issues/89 ...
  • petebankhead
  • Opened 
    on Dec 15, 2023
  • #99

qupath/qupath-docs
Document need for layout with TensorFlow/StarDist models in v0.5.0

See https://forum.image.sc/t/qupath-v-0-5-tensorflow-issue/89908/2
  • petebankhead
  • Opened 
    on Dec 15, 2023
  • #98

qupath/qupath-docs
benchmarking qupath-wsinfer

i am using this issue to provide info on the data i use when benchmarking wsinfer in qupath. image: TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.svs (link to image for download on Genomic ...
  • kaczmarj
  • 6
  • Opened 
    on Nov 10, 2023
  • #89
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