Outlier Detection Thresholding
GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) R-Shiny implementation.
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
A simple pipeline for bacterial assembly and quality control
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
Python package to calculate various sample contamination metrics.
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
Epidemic Modeling Study: This study analyzes with Linear Algebra the progression of disease contagion within a population. Covid-19 Dashboard: We have created an interactive dashboard to analyze the data on the behavior of the Coronavirus in Brazil. The project is powered by a public CSV dataset.
Generate Coverage, Quality and Contamination metrics for Sequence data.
In this repository I backup the pipelines I write for the project I am involved
luftdaten script for raspberry with enviro+
Detect and quantify plasmid DNA contamination in sequencing data
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