A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
Automated generation of immunogenic peptides from protein structures and molecular docking analysis using AlphaFold2 and AutodockVina.
ProteinInteractionFinder (PIF) is a Java 11 library for determining interatomic interactions in protein structures, obtained from PDB (Protein Data Bank) files.
Diffusion Kernel-based Graph Node Clustering for Protein Domain Assignment
Find all PDBs associated with a UniProt entry.
Identify residue contacts shared across all or most protein structures of a give protein family
Yale Gradute School module CBB752 final group project by Jiaqi Li, Keyi Li, and Anna Su.
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