Data Science in Systems Biology

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96 repositories

SPONGE-web-frontend
Public
TypeScript
•0•1•0•2•Updated Jul 17, 2025Jul 17, 2025
drugstone_backend
Public
This is the backend service repository that makes Drugst.One work. Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.
Python
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GNU General Public License v3.0
•2•0•0•0•Updated Jul 17, 2025Jul 17, 2025
NEASE
Public
A network-based approach for exon set enrichment
rna-seq statistics alternative-splicing network-analysis transcriptomics protein-protein-interaction bioinformatics-tool
Python
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GNU General Public License v3.0
•2•15•0•0•Updated Jul 16, 2025Jul 16, 2025
RPs_MPs
Public
HTML
•0•2•0•0•Updated Jul 16, 2025Jul 16, 2025
drevalpy
Public
DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.
bioinformatics machine drug-response-prediction
Python
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MIT License
•2•26•13•4•Updated Jul 14, 2025Jul 14, 2025
Dimmer
Public
Java
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GNU General Public License v3.0
•1•1•0•3•Updated Jul 12, 2025Jul 12, 2025
drugstone_plugin
Public
Drugst.One is a plug-and-play solution to make your biomedical (web-)tool drug repurposing ready. With just three lines of code the plugin can be integrated into your website within a few minues of work.
HTML
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GNU General Public License v3.0
•2•0•0•0•Updated Jul 9, 2025Jul 9, 2025
RMR_prediction
Public
HTML
•0•0•0•0•Updated Jul 7, 2025Jul 7, 2025
nfcore-tfactivity-report
Public
Astro
•0•0•0•0•Updated Jul 4, 2025Jul 4, 2025
SPONGE-web-backend
Public
Python
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GNU General Public License v3.0
•0•1•0•6•Updated Jun 24, 2025Jun 24, 2025
PRONE
Public
R Package for preprocessing, normalizing, and analyzing proteomics data
evaluation data-analysis proteomics normalization
R
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GNU General Public License v3.0
•1•5•0•0•Updated May 26, 2025May 26, 2025
PRONE.Evaluation
Public
R
•0•2•0•0•Updated May 26, 2025May 26, 2025
preprocess_drp_data
Public
This project contains all steps necessary to get from the original data repositories of CCLE/GDSC/… to usable input files.
Jupyter Notebook
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GNU General Public License v3.0
•0•2•0•0•Updated May 21, 2025May 21, 2025
DIGGER
Public
Exploring Isoform-specific interactions
visualization django-application webtool protein-protein-interaction bioinformatics-tool
Python
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GNU General Public License v3.0
•2•11•3•2•Updated May 20, 2025May 20, 2025
spongeWebPy
Public
Python
•0•1•0•3•Updated May 15, 2025May 15, 2025
PRONE.Shiny
Public
Code of the R Shiny App of the PRONE R Package.
shinyapps normalization proteomics-data-analysis
R
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GNU General Public License v3.0
•0•2•3•0•Updated May 8, 2025May 8, 2025
FOXP3-FLAG-analysis
Public
0•1•0•0•Updated May 7, 2025May 7, 2025
namco
Public
R
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GNU General Public License v3.0
•3•11•25•0•Updated Apr 17, 2025Apr 17, 2025
PPI_prediction_study
Public
Python
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MIT License
•1•8•1•0•Updated Mar 21, 2025Mar 21, 2025
teff-treg-satb1-analysis
Public
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Mar 20, 2025Mar 20, 2025
Tangram_Refinement_Strategies
Public
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Feb 12, 2025Feb 12, 2025
platlas
Public
A platelet atlas
R
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GNU General Public License v3.0
•0•1•27•0•Updated Feb 7, 2025Feb 7, 2025
NeEDL
Public
C++
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GNU General Public License v3.0
•1•6•5•3•Updated Jan 13, 2025Jan 13, 2025
SPONGE-web-R
Public
R
•0•1•0•0•Updated Dec 11, 2024Dec 11, 2024
DysRegNet_package
Public
Inferring patient-specific regulatory alterations
bioinformatics rna-seq statistics systems-biology transcriptomics linear-models gene-regulatory-network
Jupyter Notebook
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GNU General Public License v3.0
•2•3•0•0•Updated Dec 6, 2024Dec 6, 2024
easyLiftover
Public
This repository wraps the pyliftover package to provide an option for lifting over common bioinformatics file types.
bioinformatics bioinformatics-tool
Python
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GNU General Public License v3.0
•0•1•2•2•Updated Nov 22, 2024Nov 22, 2024
IHEC-AS
Public
R
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GNU General Public License v3.0
•2•1•0•0•Updated Nov 8, 2024Nov 8, 2024
cyanus
Public
A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App
R
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GNU General Public License v3.0
•2•5•8•0•Updated Oct 23, 2024Oct 23, 2024
polyester
Public
R
•2•1•0•0•Updated Oct 8, 2024Oct 8, 2024
CIRCEST-downstream
Public
R
•0•1•0•0•Updated Sep 18, 2024Sep 18, 2024