GLabViz

Graphical User Interface (GUI) Python apps written in python using qt and pyqtgrpah for quick analysis of scientific data. It also includes the ability to convert data to H5 if needed.

Python is not required to use GLabViz (see How to use?)

DOWNLOAD HERE

The primary users for this Python package application are Ginger Lab members at the University of Washington, Seattle but is licensed under MIT License and open for everyone to use.

Includes

Fluorescence Lifetime Analysis
- Analyze lifetime
- Fit data with or without IRF
- Fit with stretched, single, or double exponential functions by diff_ev or fmin_tnc
- Calculate surface recombination velocity
- Export graph and fit results
Spectra Analysis
- Analyze single spectrum
  - Fit with or without background and white light
  - Fit with single Lorentzian, single Gaussian, double Gaussian, triple Gaussian models
  - Export graph and fit results
- Analyze spectra scan
  - Load spectra scan data in .h5 or .pkl files
  - Plot raw scan data
  - Plot scan intensity sums
  - Plot fitted scan by pk_pos, fwhm, sigma, or height
  - Export fitted scan
- .pkl to .txt, .pkl to .h5 converters
Fluorescence Lifetime Imaging Microscopy (FLIM) Data Analysis
- Load lifetime scans in .h5 or .pkl files
- Plot histogram intensity sums and analyze PSF
- Export intensities array and intensities image
- Plot raw histogram data and analyze lifetime
- Compare lifetime in two different regions
Photluminescence Quantum Efficiency (PLQE) Analysis
- Plot PLQE data
- Calculate PLQE
UV-Vis Data Analysis
- Plot UV-Vis data
- Correct UV-Vis data for scattering
- Plot Tauc data
- Calculate bandgap
- Export UV-Vis and Tauc plots
General H5 View and Plot
- Load .h5 file to view file structure
- Plot datasets as a graph or an image
H5 and PKL File Viewer
- Load .h5 or .pkl file to view file structure
Image Analysis
- Load image on SPOT or Pixera settings, or specify pixel size
- Handle RGB and greyscale images
- Select magnification
- Color profile horizontally or vertically

Screenshots

Welcome Screen

Lifetime Analysis

Spectra Analysis

FLIM Analysis

UV-Vis Analysis

H5 & Pkl View

H5 Quick Plot

Image Analysis

How to use?

Standalone App - without Python or any dependencies (only for Windows users, comming soon for Mac users)

Under the releases page, download the latest release of the DataBrowser zip file
Extract the zip file and run DataBrowser.exe

With Python and its dependencies

git clone https://github.com/SarthakJariwala/Python_GUI_apps.git

Install all dependencies
Run the application by double-clicking DataBrowser.py.
OR Run it from command-line while in the PythonGUI_apps folder:

python DataBrowser.py

Dependencies

ScopeFoundry
pyqtgraph
numpy
pyqt
qtpy
h5py
matplotlib
scipy
lmfit
customplotting

Installing dependencies from command-line

conda install numpy pyqt qtpy h5py pyqtgraph
pip install ScopeFoundry
pip install matplotlib scipy lmfit customplotting==0.1.4.dev0

License

python-gui-application/Python_GUI_apps

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