File templates in Neovim powered by nvim-snippy
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Updated
May 27, 2024 - Lua
#
snippy
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This script performs bacterial genomic analysis - such as SNP calling & antibiotic resistance detection in Klebsiella pneumoniae (FastQC, Snippy, AMR gene screening)
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May 16, 2025 - Shell
mtb-mixed-infection-pipeline enables detection of mixed Mycobacterium tuberculosis infections using a reproducible workflow that integrates Snippy, FreeBayes (pooled mode) & MixInfect2. It processes raw reads through alignment, variant calling & statistical analysis to identify mixed-strain infections
whole-genome-sequencing variant-analysis freebayes mixed-infection mycobacterium-tuberculosis snippy mixinfect2
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Jun 10, 2025 - R
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