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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 405

  2. augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 271 136

  3. auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 302 169

Repositories

Showing 10 of 97 repositories
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 271 AGPL-3.0 136 224 (1 issue needs help) 34 Updated Jul 22, 2025
  • ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1,354 MIT 405 72 23 Updated Jul 22, 2025
  • nextstrain.org Public

    The Nextstrain website

    JavaScript 96 AGPL-3.0 50 73 13 Updated Jul 22, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 302 AGPL-3.0 169 248 (4 issues need help) 36 Updated Jul 22, 2025
  • auspice.us Public
    JavaScript 13 8 4 1 Updated Jul 22, 2025
  • cli Public

    The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

    Python 27 MIT 20 72 4 Updated Jul 22, 2025
  • mpox Public

    Nextstrain build for mpox virus

    Python 49 MIT 22 14 4 Updated Jul 22, 2025
  • norovirus Public
    Python 1 MIT 0 8 4 Updated Jul 22, 2025
  • zika Public

    Nextstrain build for Zika virus

    Python 9 11 3 3 Updated Jul 22, 2025
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    Python 35 34 10 19 Updated Jul 22, 2025
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