Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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Updated
Jul 28, 2025
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
A language and runtime for distributed, incremental data processing in the cloud
Assertive programming for R analysis pipelines
Automatic detection of defected solar panel modules
Modules for processing extracellular electrophysiology data from Neuropixels probes
An alternative to MCMC for rapid analysis of models
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
eDNA metabarcoding pipeline
Enables data scientists to compose pipelines of analysis which consist of data manipulation, exploratory analysis & reporting, as well as modeling steps. Data scientists can use tools of their choice through an R interface, and compose interoperable pipelines between R, Spark, and Python.
vSNP -- validate SNPs
The MaNGA Data Analysis Pipeline
vSNP -- validate SNPs
What people are tweeting about now, in your desired location? Live Streaming of Twitter Data to Spark and Tweet Analysis application on various trends Eg: Trending HashTags, Trending Mentions etc. Location based features supported.
Gradle tools to analyze bitcode of a Kotlin/Native project
Analysis pipeline capable of searching for dark compact objects in the Milky Way through astrometric lensing in real or mock Gaia DR4 data.
Automated and friendly RNA-seq analysis (deprecated)
Lena is an architectural framework for data analysis
AcetoScan - Automated pipeline for the unsupervised analysis of FTHFS amplicon sequencing
PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.
KREWS Scientific Data Pipeline Framework
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