Welcome

Welcome to DoEasy, an open-source, free to use Design of Experiments platform. Please feel free to use for academic purposes and cite this repo if you do. Contact for commerical use: alexperkssynbio@gmail.com

Installation and Startup

Docker

You need to have Git, Docker & docker compose installed on your system.

If you've never installed Docker, use this tutorial. https://www.youtube.com/watch?v=_9AWYlt86B8

Clone this repo.

git clone https://github.com/aperkins19/DoEasy.git

Build and Run The Container with Docker Compose

1. Enter the directory: cd DoEasy

2. Build and run: sudo docker compose up or sudo docker compose up &

n.b. First, docker will build the image, this may take a few minutes. When it is running, you may have to open a new terminal window for the next steps.

3. Enter the container: sudo docker exec -it doeasy /bin/bash

4. From within the docker container, run software: bash platform.sh

Docs

Introduction

DoEasy is an interactive, menu-driven tool that allows users to configure, generate, and analyze experimental designs through a series of nested Bash menus. Users can upload raw data, preprocess it, and perform statistical analyses based on the chosen design type. This guide provides step-by-step instructions on how to navigate and use the platform effectively.

Navigating the Menus

Each menu prompts the user to enter a numeric choice corresponding to an available option. Entering an invalid choice will prompt an error message and a re-display of the menu options.

For example:

` What would you like to do:

1. Configure Experiment Parameters
2. Generate Design
3. Upload .CSV File of Raw Data
4. Conduct Preprocessing
5. Return to Project Selection Enter choice [1-5]: `