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Deprecated 21L Nextclade dataset?

Status: Open.

#504 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 10, 2025

Stop producing *.xz and/or *.gz files?

Status: Open.

#502 In nextstrain/ncov-ingest;

· genehack opened on Jun 9, 2025

<code>format_date</code> does not mask incomplete dates

Status: Open.

#499 In nextstrain/ncov-ingest;

· joverlee521 opened on Apr 14, 2025

Properly handle CSV-like TSVs

Status: Open.

#482 In nextstrain/ncov-ingest;

· joverlee521 opened on Dec 6, 2024

GitHub actions log is &gt;2hr behind actual AWS run

bugSomething isn't workingSomething isn't working

Status: Open.

#474 In nextstrain/ncov-ingest;

· corneliusroemer opened on Aug 22, 2024

Benchmark in every rule is annoying - extra 2 lines that should not be necessary

Status: Open.

#472 In nextstrain/ncov-ingest;

· corneliusroemer opened on Aug 22, 2024

Remove <code>--stats</code> when we upgrade to Snakemake v8

Status: Open.

#452 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 18, 2024

Do we need <code>uncompress_cog_uk_metadata</code> and <code>compress_cog_uk_metadata</code>?

Status: Open.

#450 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 17, 2024

Rename <code>master</code> to <code>main</code>

blockedDependent on external developmentDependent on external development

enhancementNew feature or requestNew feature or request

Status: Open.

#449 In nextstrain/ncov-ingest;

· genehack opened on Jun 13, 2024

Explore parallelizing <code>transform-gisaid</code>

Status: Open.

#448 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 13, 2024

GISAID workflow hitting max_session_duration

Status: Open.

#446 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 11, 2024

Lock dependencies using pip-compile

enhancementNew feature or requestNew feature or request

Status: Open.

#438 In nextstrain/ncov-ingest;

· victorlin opened on Feb 21, 2024