Skip to content
@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

Pinned Loading

  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 9 5

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 11 7

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 2 2

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python 1 1

Repositories

Showing 10 of 249 repositories
  • hlaminer Public

    wrapper workflow for BCGSC tool HLAminer

    oicr-gsi/hlaminer’s past year of commit activity
    WDL 1 MIT 0 0 0 Updated Jul 17, 2025
  • guanyin Public

    Reporting repository and report record keeping

    oicr-gsi/guanyin’s past year of commit activity
    JavaScript 1 MIT 0 0 7 Updated Jul 17, 2025
  • nabu Public

    QC tracking for files via a web service

    oicr-gsi/nabu’s past year of commit activity
    JavaScript 0 MIT 0 2 1 Updated Jul 17, 2025
  • hmmcopy Public

    Calls Copy Number Variants on sequencing data from cancer patients

    oicr-gsi/hmmcopy’s past year of commit activity
    WDL 3 1 1 0 Updated Jul 17, 2025
  • kallisto Public

    Quantifying abundances of transcripts from RNA-Seq data

    oicr-gsi/kallisto’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 17, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 11 GPL-3.0 7 9 2 Updated Jul 17, 2025
  • longrangerWgs Public
    oicr-gsi/longrangerWgs’s past year of commit activity
    WDL 0 0 0 1 Updated Jul 17, 2025
  • estimate Public

    ESTIMATE provides researchers with scores for tumor purity, the level of stromal cells present, and the infiltration level of immune cells in tumor tissues based on expression data

    oicr-gsi/estimate’s past year of commit activity
    Java 1 MIT 0 0 0 Updated Jul 17, 2025
  • ercc Public

    workflow for analysis of samples with RNA spike-ins (ERCC)

    oicr-gsi/ercc’s past year of commit activity
    WDL 1 GPL-3.0 0 0 0 Updated Jul 17, 2025
  • determinePhiX Public

    Workflow to determine PhiX contamination of undetermined reads

    oicr-gsi/determinePhiX’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 17, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…