Feature map and function annotation of Proteins

R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.

Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

Parse consecutive matches in BLAST results.

Unraveling Evolutionary Relationship between Fungi Species

BLAST without Sys.Call()

PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database

This repository contains my implementation, that I built from scratch, of the heuristic blast algorithm used for DNA or protein sequence search against a massive database.

This project applies bioinformatics techniques to analyze biological sequences, including protein structure prediction, sequence alignment, and comparative genomics using tools like BLASTP, AlphaFold3, and BioPython. It combines algorithmic methods with practical applications in computational genomics.

Modeling chromosomal gene location by protein composition

Using BLAST and Transdecoder.

Scripts to run benchmarks of BLAST and PLAST on a supercomputer

Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.

Pipeline to get a protein's residues conservation JSD scores

To classify plant ado-keto reductase-domain (PF00248) containing proteins via blastp search