Pathogen NGS Documentary
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Apr 18, 2024
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genomic-epidemiology
Here are 15 public repositories matching this topic...
Nextstrain build for mpox virus
metadata bioinformatics pipeline pathogen phylogenetics genbank augur nextstrain auspice virus-evolution genomic-epidemiology monkeypox mpox
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Jun 27, 2025 - Python
Official place for proposals and details around monkeypox virus lineage designations
bioinformatics phylogenetics virus-evolution genomic-epidemiology outbreak-investigation monkeypox monkeypox-data monkeypox-lineages
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Mar 26, 2025 - Python
mGEMS Genomic epidemiology with mixed samples
c-plus-plus metagenomics high-throughput-sequencing plate-sweep genomic-epidemiology taxonomic-binning
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Sep 4, 2024 - C++
Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023
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Apr 23, 2024 - R
Efficiently store FASTA sequences in sqlite compressed with sidecar zstd dictionary
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Oct 4, 2021 - Python
BA.2.86 project with Sigal lab
bioinformatics snakemake computational-biology phylogenetics nextstrain treetime sars-cov-2 virus-evolution genomic-epidemiology sars-cov-2-variants
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Jun 12, 2025 - Python
A GLUE project for Rabies Virus (RABV).
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Jun 10, 2025 - JavaScript
Scripts and data for the CoVaRR-Net Pillar 6 notebook
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Jun 24, 2025 - HTML
Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al., Science, 2020) https://doi.org/10.1126/science.abb9263
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Jun 29, 2020 - Python
Automated genomic analysis of SARS-CoV-2 sequence data
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Apr 16, 2025 - Python
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
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May 22, 2025 - Python
Cluster Investigation & Virus Epidemiology Tool
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May 26, 2021 - Python
Gallery for GEViT Project
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Jan 14, 2020 - HTML
Dr. Buqing Yi
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May 7, 2023
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