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Digital Slide Archive

Tools for the management, visualization, and analysis of digital pathology data.

78 followers
Atlanta, GA, USA
https://digitalslidearchive.github.io/
dagutman@gmail.com

Overview
Repositories 37
Projects 2
Packages
People 1

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Overview
Repositories
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digital_slide_archive Public

The official deployment of the Digital Slide Archive and HistomicsTK.

Python 121 56
HistomicsTK Public

A Python toolkit for pathology image analysis algorithms.

Python 420 120
HistomicsUI Public

A Girder plugin for pathology image annotations and analysis.

JavaScript 70 24

Repositories

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Showing 10 of 37 repositories

HistomicsUI Public
A Girder plugin for pathology image annotations and analysis.

JavaScript 70 Apache-2.0 24 50 1 Updated Jun 3, 2025
digital_slide_archive Public
The official deployment of the Digital Slide Archive and HistomicsTK.

Python 121 Apache-2.0 56 27 0 Updated Jun 3, 2025
HistomicsTK Public
A Python toolkit for pathology image analysis algorithms.

Python 420 Apache-2.0 120 23 1 Updated Jun 2, 2025
dive-dsa Public
DIVE for Digital Slide Archive

Vue 1 Apache-2.0 0 6 3 Updated Jun 2, 2025
DSA-WSI-DeID Public
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.

Python 17 Apache-2.0 8 13 0 Updated May 30, 2025
large-image-utilities Public
Experimental utilities for use with large_image

Python 3 Apache-2.0 1 0 0 Updated May 28, 2025
girder_volview Public

Python 3 2 10 1 Updated May 28, 2025
histomics-label Public
A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images

Vue 3 7 12 4 Updated May 27, 2025
superpixel-classification Public
A test cli for classifying superpixels with arbitrary labels

Python 5 4 0 0 Updated May 20, 2025
histomics_aws_deployment Public
Infrastructure-as-code scripts for deploying high-availability, scalable Histomics on AWS

HCL 0 0 5 0 Updated May 15, 2025

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