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Numpy version >2

bug

Status: Open.

#64 In SystemsBioinformatics/cbmpy;

· MaaikeRemeijer opened on Oct 4, 2024

Group information not updated when reactions are renamed

Status: Open.

#59 In SystemsBioinformatics/cbmpy;

· pranasag opened on Oct 27, 2023

Reaction upper and lower bound aren't copied correctly when calling reaction.copy()

Status: Open.

#52 In SystemsBioinformatics/cbmpy;

· StevenWijnen opened on Jun 14, 2023

Is documentation for 0.8 available?

Status: Open.

#42 In SystemsBioinformatics/cbmpy;

· jonrkarr opened on Sep 17, 2021

 ·  

Release 0.8.8

What is the version requirement for swiglpk?

Status: Open.

#39 In SystemsBioinformatics/cbmpy;

· jonrkarr opened on Aug 17, 2021

 ·  

Release 0.8.8

Automate release to BioSimulators

Status: Open.

#34 In SystemsBioinformatics/cbmpy;

· jonrkarr opened on Jun 8, 2021

setFluxBoundsFromDict can only update all reaction bounds.

bug

enhancement

Status: Open.

#26 In SystemsBioinformatics/cbmpy;

· JulLis opened on Nov 4, 2020

 ·  

Release 0.8.8

doFBAMinSum fails when a new reaction is added to a model

bug

Status: Open.

#25 In SystemsBioinformatics/cbmpy;

· willigott opened on Jun 7, 2020

 ·  

Release 0.8.8

request multi rename function

enhancement

Status: Open.

#24 In SystemsBioinformatics/cbmpy;

· JulLis opened on Mar 9, 2020

createGeneProteinAssociation can lead to duplicate gene labels

bug

Status: Open.

#23 In SystemsBioinformatics/cbmpy;

· willigott opened on Oct 31, 2019

 ·  

Release 0.8.8

When reactions are deleted they are still part of groups and their IDs are still associated with genes.

bug

duplicate

Status: Open.

#22 In SystemsBioinformatics/cbmpy;

· willigott opened on Oct 31, 2019

 ·  

Release 0.8.8

Groups use references to objects

enhancement

Status: Open.

#21 In SystemsBioinformatics/cbmpy;

· bgoli opened on Aug 11, 2019

 ·  

Release 0.8.8