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@UMEssen

University Medicine Essen

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  1. SALT SALT Public

    Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.

    Python 78 7

  2. FHIR-PYrate FHIR-PYrate Public

    FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…

    Python 63 14

  3. saros-dataset saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    Python 49 7

  4. Body-and-Organ-Analysis Body-and-Organ-Analysis Public

    BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …

    Python 34 10

  5. DICOM-RST DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    Rust 19 2

  6. dicom-deidentifier-ts dicom-deidentifier-ts Public

    TypeScript 11

Repositories

Showing 10 of 19 repositories
  • aipal-validation Public
    0 0 0 0 Updated May 8, 2025
  • DeidentiFHIR-Pipeline Public

    With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.

    Java 1 MIT 0 1 1 Updated May 7, 2025
  • ikim-fhirclient Public

    IKIM FHIR Client

    TypeScript 0 MIT 1 5 1 Updated Apr 29, 2025
  • DICOM-RST Public

    DICOMweb-compatible gateway server with DIMSE and S3 implementations

    Rust 19 MIT 2 12 (1 issue needs help) 2 Updated Apr 29, 2025
  • BOA-Profiles Public
    GLSL 2 0 0 0 Updated Apr 10, 2025
  • fhir-former Public

    FHIR-Former: An open-source framework integrating FHIR healthcare data with large language models for automated clinical predictions and risk assessments.

    Python 1 MIT 0 0 1 Updated Apr 4, 2025
  • DOME Public

    An Encoder based Model for Deidentification of Medical Entities in Clinical Documents

    Python 1 MIT 0 0 1 Updated Jan 24, 2025
  • FHIR-Converter Public

    Thin wrapper around Microsoft FHIR Converter to allow for a standalone FHIR server that provides data conversion operations.

    C# 2 MIT 2 0 0 Updated Jan 16, 2025
  • DeidentiFHIR Public
    Scala 9 MIT 2 10 1 Updated Jan 16, 2025
  • saros-dataset Public

    Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data

    Python 49 MIT 7 0 1 Updated Jan 16, 2025
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